miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 223784 1.11 0.001327
Target:  5'- gGACCGGACGUCGCCGGGGACGUCGGCg -3'
miRNA:   3'- -CUGGCCUGCAGCGGCCCCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 219551 0.86 0.060664
Target:  5'- cACCGGACGgucuUCGCCGGGGACGUgugcgaCGGCu -3'
miRNA:   3'- cUGGCCUGC----AGCGGCCCCUGCA------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 123669 0.8 0.160905
Target:  5'- cGGCCGGGCucggggaagcgguccGUCGCgGcGGGGCGUUGGCg -3'
miRNA:   3'- -CUGGCCUG---------------CAGCGgC-CCCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 120634 0.79 0.174948
Target:  5'- cGGCgGGACGggaCGCCGGGGGCG-CGGa -3'
miRNA:   3'- -CUGgCCUGCa--GCGGCCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 81842 0.79 0.183212
Target:  5'- uGCCGGACcggGUCGGGGAgCGUCGGCg -3'
miRNA:   3'- cUGGCCUGcagCGGCCCCU-GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 118601 0.78 0.210104
Target:  5'- -cCCGGGCGUCugGCCGcGGGACGUCGa- -3'
miRNA:   3'- cuGGCCUGCAG--CGGC-CCCUGCAGCcg -5'
8946 5' -62.1 NC_002512.2 + 121882 0.78 0.196257
Target:  5'- ---gGGAgGUCGCgGGGGACGcUCGGCg -3'
miRNA:   3'- cuggCCUgCAGCGgCCCCUGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 95094 0.78 0.196257
Target:  5'- aGACCGG-CGUCGggcCCGGGGACG-CGGg -3'
miRNA:   3'- -CUGGCCuGCAGC---GGCCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 67761 0.77 0.224786
Target:  5'- aGCCGGGguCGUcuccggCGCCGGGGuCGUCGGUg -3'
miRNA:   3'- cUGGCCU--GCA------GCGGCCCCuGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 72769 0.77 0.231931
Target:  5'- cGACCcccgacgccgggagGGACGUCGCCGGgacgggcccgccguGGGCGcCGGCg -3'
miRNA:   3'- -CUGG--------------CCUGCAGCGGCC--------------CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 4437 0.77 0.240329
Target:  5'- aGACCGG-CGgggUGCCGGGcgcgggggucGGCGUCGGCc -3'
miRNA:   3'- -CUGGCCuGCa--GCGGCCC----------CUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 19357 0.76 0.25676
Target:  5'- uGCCGGAC--CGUCGGGGGC-UCGGCg -3'
miRNA:   3'- cUGGCCUGcaGCGGCCCCUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 217764 0.76 0.280083
Target:  5'- -cCCGGGCccguccccGUCGCCGGGGuCG-CGGCc -3'
miRNA:   3'- cuGGCCUG--------CAGCGGCCCCuGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 217581 0.75 0.317508
Target:  5'- aGCCGGuccggcgGCGcCGCCucGGGGGuCGUCGGCg -3'
miRNA:   3'- cUGGCC-------UGCaGCGG--CCCCU-GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 102336 0.75 0.318174
Target:  5'- -cCCGGACGacgaGCCGGguccGGGCGUCGGUc -3'
miRNA:   3'- cuGGCCUGCag--CGGCC----CCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 204802 0.75 0.324213
Target:  5'- -cCCGGgagguccGCGUC-CCGGGGGCG-CGGCg -3'
miRNA:   3'- cuGGCC-------UGCAGcGGCCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 204645 0.75 0.298659
Target:  5'- gGACCgGGACGgcgacgCGCgGGGGAuCGcCGGCg -3'
miRNA:   3'- -CUGG-CCUGCa-----GCGgCCCCU-GCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 160853 0.75 0.311564
Target:  5'- cGCUGGGCGcagUCGCagaGGGGcggacACGUCGGCg -3'
miRNA:   3'- cUGGCCUGC---AGCGg--CCCC-----UGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 226689 0.75 0.298659
Target:  5'- cGCCGGGcCGUCGcCCGcGGcGGCGUCGaGCg -3'
miRNA:   3'- cUGGCCU-GCAGC-GGC-CC-CUGCAGC-CG- -5'
8946 5' -62.1 NC_002512.2 + 134311 0.74 0.352795
Target:  5'- ---aGGACGUCGCCGGGGc---CGGCg -3'
miRNA:   3'- cuggCCUGCAGCGGCCCCugcaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.