miRNA display CGI


Results 21 - 40 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 224341 0.67 0.728371
Target:  5'- -uCCGcGGCGccgCGCCGGGGuCG-CGGg -3'
miRNA:   3'- cuGGC-CUGCa--GCGGCCCCuGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 224130 0.66 0.763866
Target:  5'- cGGCCguGGACccgCGCCGGGaGGCGgacgcgugaGGCg -3'
miRNA:   3'- -CUGG--CCUGca-GCGGCCC-CUGCag-------CCG- -5'
8946 5' -62.1 NC_002512.2 + 224065 0.71 0.533596
Target:  5'- cGACCauuucGACGcCGCCGaacGGGGCGgCGGCg -3'
miRNA:   3'- -CUGGc----CUGCaGCGGC---CCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 224041 0.72 0.446198
Target:  5'- cGACgGGGC--CGCCGGGGAcgacuCGUCGGg -3'
miRNA:   3'- -CUGgCCUGcaGCGGCCCCU-----GCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 223932 0.73 0.405581
Target:  5'- aGCCGGACGgggaggucgaUCcCUGGGGACGguucCGGCg -3'
miRNA:   3'- cUGGCCUGC----------AGcGGCCCCUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 223784 1.11 0.001327
Target:  5'- gGACCGGACGUCGCCGGGGACGUCGGCg -3'
miRNA:   3'- -CUGGCCUGCAGCGGCCCCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 222407 0.67 0.746287
Target:  5'- cGCCGcGGCuUCGgCGGGGGC--CGGCa -3'
miRNA:   3'- cUGGC-CUGcAGCgGCCCCUGcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 222195 0.71 0.524548
Target:  5'- cGGCCGG-CGUCGUccguuucuucguCGGGGuggcCGUCGGg -3'
miRNA:   3'- -CUGGCCuGCAGCG------------GCCCCu---GCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 221683 0.66 0.781052
Target:  5'- gGACgCGGACaccCGCCcGGcGACGcUCGGCc -3'
miRNA:   3'- -CUG-GCCUGca-GCGGcCC-CUGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 221390 0.69 0.645099
Target:  5'- -cUCGGGCGgggCGCgggCGGGGAgG-CGGCg -3'
miRNA:   3'- cuGGCCUGCa--GCG---GCCCCUgCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 221299 0.67 0.755122
Target:  5'- aGGCCGGG-GUCGgCGGGGAg--CGGg -3'
miRNA:   3'- -CUGGCCUgCAGCgGCCCCUgcaGCCg -5'
8946 5' -62.1 NC_002512.2 + 221253 0.68 0.700991
Target:  5'- cGGCCGcGGCGgaaGUCGGGGgACG-CGGg -3'
miRNA:   3'- -CUGGC-CUGCag-CGGCCCC-UGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 220844 0.7 0.560131
Target:  5'- cGACgGGcugugucgcgucuACGUCGuCCGcGGGGCcUCGGCg -3'
miRNA:   3'- -CUGgCC-------------UGCAGC-GGC-CCCUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 219673 0.68 0.698226
Target:  5'- gGAuCUGGGCG-CGCCGcccgaggacgaggaGGaGCGUCGGCg -3'
miRNA:   3'- -CU-GGCCUGCaGCGGC--------------CCcUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 219551 0.86 0.060664
Target:  5'- cACCGGACGgucuUCGCCGGGGACGUgugcgaCGGCu -3'
miRNA:   3'- cUGGCCUGC----AGCGGCCCCUGCA------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 219411 0.71 0.506633
Target:  5'- cGCCGcGACGcccaCGCCcGGGGCGgCGGCg -3'
miRNA:   3'- cUGGC-CUGCa---GCGGcCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 219301 0.67 0.755122
Target:  5'- -cCCGcuuCGUCGUccgcggccaCGGGGagaGCGUCGGCg -3'
miRNA:   3'- cuGGCcu-GCAGCG---------GCCCC---UGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 218960 0.67 0.755122
Target:  5'- cGACCccucCGUCGCCGgcuGGGAgGUcCGGCc -3'
miRNA:   3'- -CUGGccu-GCAGCGGC---CCCUgCA-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 218105 0.7 0.561053
Target:  5'- --gCGGGCGUCGCgccCGGGGuCGcUCGGg -3'
miRNA:   3'- cugGCCUGCAGCG---GCCCCuGC-AGCCg -5'
8946 5' -62.1 NC_002512.2 + 217804 0.71 0.519148
Target:  5'- gGAUCGG-CGUCGCCgucccgaucgucgacGGcGGGCGguUCGGCa -3'
miRNA:   3'- -CUGGCCuGCAGCGG---------------CC-CCUGC--AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.