miRNA display CGI


Results 61 - 80 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 43652 0.67 0.728371
Target:  5'- gGACCgGGACcUCGCCcucGGuGGCGgccgCGGCg -3'
miRNA:   3'- -CUGG-CCUGcAGCGGc--CC-CUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 45211 0.68 0.663833
Target:  5'- cGGCgCGGACGgcCGCCGaccGGAUuUCGGCg -3'
miRNA:   3'- -CUG-GCCUGCa-GCGGCc--CCUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 45411 0.67 0.719305
Target:  5'- cGugCGGGCGcUCGaCGGcGGCGcCGGCc -3'
miRNA:   3'- -CugGCCUGC-AGCgGCCcCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 50600 0.67 0.719305
Target:  5'- gGACUGGACGgugCGauCCGGGGACGa---- -3'
miRNA:   3'- -CUGGCCUGCa--GC--GGCCCCUGCagccg -5'
8946 5' -62.1 NC_002512.2 + 52290 0.66 0.814021
Target:  5'- cGCCGaGAuCGauUCGCCGGaGACGcUGGCg -3'
miRNA:   3'- cUGGC-CU-GC--AGCGGCCcCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 53538 0.69 0.645099
Target:  5'- cGACUGGAgaCGgagaCGCUGGaGACGUCGGa -3'
miRNA:   3'- -CUGGCCU--GCa---GCGGCCcCUGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 53627 0.68 0.682482
Target:  5'- --gCGGAuCGUCGgCGGGGAgaagCGGCa -3'
miRNA:   3'- cugGCCU-GCAGCgGCCCCUgca-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 53691 0.66 0.772512
Target:  5'- aGGCUGG-CGUaCGCCGaGGAgcuggagaagcUGUCGGCc -3'
miRNA:   3'- -CUGGCCuGCA-GCGGCcCCU-----------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 54673 0.66 0.805971
Target:  5'- gGACCGG-CGga--CGGuGGACG-CGGCg -3'
miRNA:   3'- -CUGGCCuGCagcgGCC-CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 57054 0.72 0.429675
Target:  5'- cGACCGGGgGgCGCCGGGcGaACGguaGGCg -3'
miRNA:   3'- -CUGGCCUgCaGCGGCCC-C-UGCag-CCG- -5'
8946 5' -62.1 NC_002512.2 + 57875 0.66 0.772512
Target:  5'- cGGCCGGACcggCGaCGGcGGCGaCGGCg -3'
miRNA:   3'- -CUGGCCUGca-GCgGCCcCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 62053 0.71 0.533596
Target:  5'- -cCCGGACGU-GCgCGGGGuCcUCGGCc -3'
miRNA:   3'- cuGGCCUGCAgCG-GCCCCuGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 62296 0.66 0.772512
Target:  5'- -cCCGGGCGUCGCagaggCGGcGGAUGacCGGg -3'
miRNA:   3'- cuGGCCUGCAGCG-----GCC-CCUGCa-GCCg -5'
8946 5' -62.1 NC_002512.2 + 67761 0.77 0.224786
Target:  5'- aGCCGGGguCGUcuccggCGCCGGGGuCGUCGGUg -3'
miRNA:   3'- cUGGCCU--GCA------GCGGCCCCuGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 67971 0.73 0.413518
Target:  5'- cGCCGuGGCGUcCGCCGGaGGAgGgcCGGCg -3'
miRNA:   3'- cUGGC-CUGCA-GCGGCC-CCUgCa-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 70693 0.67 0.710176
Target:  5'- gGACCGGcCGg-GCgGGGGACGggGGg -3'
miRNA:   3'- -CUGGCCuGCagCGgCCCCUGCagCCg -5'
8946 5' -62.1 NC_002512.2 + 71581 0.67 0.737368
Target:  5'- cGCCGGACGacCGCggccuUGGGGGC--CGGCa -3'
miRNA:   3'- cUGGCCUGCa-GCG-----GCCCCUGcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 72769 0.77 0.231931
Target:  5'- cGACCcccgacgccgggagGGACGUCGCCGGgacgggcccgccguGGGCGcCGGCg -3'
miRNA:   3'- -CUGG--------------CCUGCAGCGGCC--------------CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 72864 0.66 0.780203
Target:  5'- -uCCGGgccGCGUCGCCGuugucgcGGGGC-UCGGg -3'
miRNA:   3'- cuGGCC---UGCAGCGGC-------CCCUGcAGCCg -5'
8946 5' -62.1 NC_002512.2 + 73991 0.68 0.661027
Target:  5'- cGCCGGAcucguccccgcgccCGcCGUCGGGGACGaacagcgUGGCc -3'
miRNA:   3'- cUGGCCU--------------GCaGCGGCCCCUGCa------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.