miRNA display CGI


Results 81 - 100 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 102865 0.68 0.791889
Target:  5'- -cCCGACC--GGGG-GGACgccuacggGGGACCCg -3'
miRNA:   3'- cuGGCUGGagCCUCaCCUG--------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 96406 0.68 0.791889
Target:  5'- gGGCCGAgugguUCUCGGggaggaagcAGUGGAC-GGACCa -3'
miRNA:   3'- -CUGGCU-----GGAGCC---------UCACCUGcCCUGGg -5'
8947 3' -60 NC_002512.2 + 102066 0.68 0.791889
Target:  5'- --aCGACCUccCGGAGc---CGGGACCCg -3'
miRNA:   3'- cugGCUGGA--GCCUCaccuGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 11429 0.68 0.791889
Target:  5'- uGACCGcgguCCgCGGGGacgccgcGGACGGGGgCCg -3'
miRNA:   3'- -CUGGCu---GGaGCCUCa------CCUGCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 226594 0.68 0.783346
Target:  5'- gGGCgCGGCC-CGGGGgaggaggGGACGGcGACgCa -3'
miRNA:   3'- -CUG-GCUGGaGCCUCa------CCUGCC-CUGgG- -5'
8947 3' -60 NC_002512.2 + 35095 0.68 0.783346
Target:  5'- -cCCGGCucagcucccgCUCGGAguucccGUGGACGcGGACCa -3'
miRNA:   3'- cuGGCUG----------GAGCCU------CACCUGC-CCUGGg -5'
8947 3' -60 NC_002512.2 + 227482 0.68 0.783346
Target:  5'- cGGCCGGCCgcgaGGAGguagGaGACGccgcGACCCg -3'
miRNA:   3'- -CUGGCUGGag--CCUCa---C-CUGCc---CUGGG- -5'
8947 3' -60 NC_002512.2 + 120237 0.68 0.782485
Target:  5'- cGACgGGCCUgucgUGGAG-GGccuacccGCGGGACCg -3'
miRNA:   3'- -CUGgCUGGA----GCCUCaCC-------UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 127839 0.68 0.774684
Target:  5'- aACCG-CUcCGGAGUccGGAgCGGGAUCCc -3'
miRNA:   3'- cUGGCuGGaGCCUCA--CCU-GCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 188143 0.68 0.774684
Target:  5'- cGCCGAgCUCaucaAGUGGAuCGGGcCCCa -3'
miRNA:   3'- cUGGCUgGAGcc--UCACCU-GCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 124298 0.68 0.774684
Target:  5'- cGGCuCGACCgcgCGGAGcuGAuCGGGGCCg -3'
miRNA:   3'- -CUG-GCUGGa--GCCUCacCU-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 109041 0.68 0.774684
Target:  5'- gGACCGGgggggCUCGGGGgacGACcGGACCCg -3'
miRNA:   3'- -CUGGCUg----GAGCCUCac-CUGcCCUGGG- -5'
8947 3' -60 NC_002512.2 + 46759 0.68 0.774684
Target:  5'- uGACCGGCUUCaGGuuGUGuuuCGGGGCCg -3'
miRNA:   3'- -CUGGCUGGAG-CCu-CACcu-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 103302 0.68 0.774684
Target:  5'- aGCCGGCCgucguaGGAcaGGACGGccgaGGCCCg -3'
miRNA:   3'- cUGGCUGGag----CCUcaCCUGCC----CUGGG- -5'
8947 3' -60 NC_002512.2 + 153169 0.68 0.773812
Target:  5'- --gCGACCUaCGGggcggcgggcagcGGUGGGgagggcggcaccCGGGACCCg -3'
miRNA:   3'- cugGCUGGA-GCC-------------UCACCU------------GCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 116888 0.68 0.765911
Target:  5'- cGGCUGGCggCGGGGccgGGGCGGGcUCCu -3'
miRNA:   3'- -CUGGCUGgaGCCUCa--CCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 128664 0.68 0.765911
Target:  5'- uGCCGGCgC-CGGAacccgGcGGACGGGGCCg -3'
miRNA:   3'- cUGGCUG-GaGCCU-----CaCCUGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 76404 0.68 0.765911
Target:  5'- uGACCguGACgUCGGAaggGUGGGCGGaGACg- -3'
miRNA:   3'- -CUGG--CUGgAGCCU---CACCUGCC-CUGgg -5'
8947 3' -60 NC_002512.2 + 7242 0.68 0.765911
Target:  5'- cGGCCGGCCgucgcggCGGAGcGGcguccguCGGGAUCg -3'
miRNA:   3'- -CUGGCUGGa------GCCUCaCCu------GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 161531 0.68 0.765911
Target:  5'- cGCCGAgCC-CGGGGacUGGAUGGuGGCCg -3'
miRNA:   3'- cUGGCU-GGaGCCUC--ACCUGCC-CUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.