miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 82205 0.67 0.824739
Target:  5'- gGGCCGGCgUccuccCGGGGcgGGaaGCGGGGCCg -3'
miRNA:   3'- -CUGGCUGgA-----GCCUCa-CC--UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 10931 0.67 0.824739
Target:  5'- aGCCGGCgaCGGAGgggucGACGaGGACgCCg -3'
miRNA:   3'- cUGGCUGgaGCCUCac---CUGC-CCUG-GG- -5'
8947 3' -60 NC_002512.2 + 116379 0.67 0.824739
Target:  5'- uGCUGGCCcugCGGuccccgGGGCGGGucGCCCu -3'
miRNA:   3'- cUGGCUGGa--GCCuca---CCUGCCC--UGGG- -5'
8947 3' -60 NC_002512.2 + 218288 0.67 0.816739
Target:  5'- -cUCGGCCUCGGGGUccccggcccuGGGCGGccGCUCg -3'
miRNA:   3'- cuGGCUGGAGCCUCA----------CCUGCCc-UGGG- -5'
8947 3' -60 NC_002512.2 + 124990 0.67 0.816739
Target:  5'- uGCagGGCgUCGGAGUGcauCGGGGCCa -3'
miRNA:   3'- cUGg-CUGgAGCCUCACcu-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 138026 0.67 0.816739
Target:  5'- gGACggCGGCCUCGGGGgcaUGaGcCGGGACUg -3'
miRNA:   3'- -CUG--GCUGGAGCCUC---AC-CuGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 102900 0.67 0.816739
Target:  5'- cGACCcGCgCUgGGAGaGGAcCGcGGACCCc -3'
miRNA:   3'- -CUGGcUG-GAgCCUCaCCU-GC-CCUGGG- -5'
8947 3' -60 NC_002512.2 + 72766 0.67 0.816739
Target:  5'- cGCCGACCcCcgacgccgGGAGggacgucgccgGGACGGG-CCCg -3'
miRNA:   3'- cUGGCUGGaG--------CCUCa----------CCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 225794 0.67 0.815931
Target:  5'- cGCCGGCCgggccgCGGgcggccgGGUGGcCuGGGACCUc -3'
miRNA:   3'- cUGGCUGGa-----GCC-------UCACCuG-CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 5094 0.67 0.808593
Target:  5'- cGCCGGCgUCGGcGcGGGCGGGAg-- -3'
miRNA:   3'- cUGGCUGgAGCCuCaCCUGCCCUggg -5'
8947 3' -60 NC_002512.2 + 116689 0.67 0.808593
Target:  5'- -cCCGGCUcccgcucgCGGAGcGGACGGcGACgCCg -3'
miRNA:   3'- cuGGCUGGa-------GCCUCaCCUGCC-CUG-GG- -5'
8947 3' -60 NC_002512.2 + 50868 0.67 0.808593
Target:  5'- -cCCGACgUCGGAGaaGGAcaCGGGAaCCa -3'
miRNA:   3'- cuGGCUGgAGCCUCa-CCU--GCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 127296 0.67 0.800308
Target:  5'- cGGCCGACga-GGAGgagaGGAUGGaGACCa -3'
miRNA:   3'- -CUGGCUGgagCCUCa---CCUGCC-CUGGg -5'
8947 3' -60 NC_002512.2 + 202002 0.67 0.800308
Target:  5'- uGGCuCG-UCUCGGAcagGUGG-CGGGGCCg -3'
miRNA:   3'- -CUG-GCuGGAGCCU---CACCuGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 39671 0.67 0.800308
Target:  5'- uGCCGACCga--AGUGuGGCaGGACCCg -3'
miRNA:   3'- cUGGCUGGagccUCAC-CUGcCCUGGG- -5'
8947 3' -60 NC_002512.2 + 107494 0.67 0.800308
Target:  5'- cGACCGGCCcgcagCGGucucUGcGGCuGGACCCg -3'
miRNA:   3'- -CUGGCUGGa----GCCuc--AC-CUGcCCUGGG- -5'
8947 3' -60 NC_002512.2 + 108828 0.67 0.800308
Target:  5'- -uCCGcGCCUCGGGc--GGCGGGuACCCg -3'
miRNA:   3'- cuGGC-UGGAGCCUcacCUGCCC-UGGG- -5'
8947 3' -60 NC_002512.2 + 50590 0.67 0.800308
Target:  5'- cGCCGcCCgCGGAcUGGACGGugcGAUCCg -3'
miRNA:   3'- cUGGCuGGaGCCUcACCUGCC---CUGGG- -5'
8947 3' -60 NC_002512.2 + 224113 0.67 0.800308
Target:  5'- cGCCGaACCgUCuGAGcGGACGGGACa- -3'
miRNA:   3'- cUGGC-UGG-AGcCUCaCCUGCCCUGgg -5'
8947 3' -60 NC_002512.2 + 102865 0.68 0.791889
Target:  5'- -cCCGACC--GGGG-GGACgccuacggGGGACCCg -3'
miRNA:   3'- cuGGCUGGagCCUCaCCUG--------CCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.