miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 186528 0.66 0.8478
Target:  5'- -gUCGACCUCuGcGUGcACGGGGCCg -3'
miRNA:   3'- cuGGCUGGAGcCuCACcUGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 194740 0.66 0.847055
Target:  5'- uGCCGAUCUCcaccGUGGGCgccagucGGGACCUg -3'
miRNA:   3'- cUGGCUGGAGccu-CACCUG-------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 220768 0.67 0.840276
Target:  5'- aGGCCGACgUCGGGuccaUGGACcugcugGGGAUCg -3'
miRNA:   3'- -CUGGCUGgAGCCUc---ACCUG------CCCUGGg -5'
8947 3' -60 NC_002512.2 + 111988 0.67 0.840276
Target:  5'- cGCUGGCCgUGGAGcagcGACGGGcCCCc -3'
miRNA:   3'- cUGGCUGGaGCCUCac--CUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 187005 0.67 0.840276
Target:  5'- cGGCgGGCCUguacgcgggcgUGGAGgaggaGGACGaGGACCg -3'
miRNA:   3'- -CUGgCUGGA-----------GCCUCa----CCUGC-CCUGGg -5'
8947 3' -60 NC_002512.2 + 222531 0.67 0.840276
Target:  5'- cGGCCG-CCgUCGcGGUGGgccgggcuACGGcGACCCg -3'
miRNA:   3'- -CUGGCuGG-AGCcUCACC--------UGCC-CUGGG- -5'
8947 3' -60 NC_002512.2 + 220570 0.67 0.840276
Target:  5'- uGGCCGugCgccgcccgaUGGAGUGc-CGGGAUCCg -3'
miRNA:   3'- -CUGGCugGa--------GCCUCACcuGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 76599 0.67 0.840276
Target:  5'- cGCCGGCgUCGGAcgucUGucCGGGGCCg -3'
miRNA:   3'- cUGGCUGgAGCCUc---ACcuGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 147697 0.67 0.840276
Target:  5'- cGCCGGCCgaCGGc--GGACGGGcucucgACCCu -3'
miRNA:   3'- cUGGCUGGa-GCCucaCCUGCCC------UGGG- -5'
8947 3' -60 NC_002512.2 + 214987 0.67 0.840276
Target:  5'- cGCCGACCUCGGGaUGcccguCGGGgaGCUCa -3'
miRNA:   3'- cUGGCUGGAGCCUcACcu---GCCC--UGGG- -5'
8947 3' -60 NC_002512.2 + 86260 0.67 0.837986
Target:  5'- gGGCCGAgg-CGGGGagGGACgaacgccggagacgGGGGCCCg -3'
miRNA:   3'- -CUGGCUggaGCCUCa-CCUG--------------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 89870 0.67 0.835682
Target:  5'- uGAUCGuaguggcucuccagcGCCUCGGucUGGGuCGGcGACCCc -3'
miRNA:   3'- -CUGGC---------------UGGAGCCucACCU-GCC-CUGGG- -5'
8947 3' -60 NC_002512.2 + 128583 0.67 0.832587
Target:  5'- gGGCCGACCcugCGaGAGgccgGGAcgucCGGGuACCUg -3'
miRNA:   3'- -CUGGCUGGa--GC-CUCa---CCU----GCCC-UGGG- -5'
8947 3' -60 NC_002512.2 + 116454 0.67 0.832587
Target:  5'- cACCcAgCUCGGGGacgGGGCGGuGAUCCc -3'
miRNA:   3'- cUGGcUgGAGCCUCa--CCUGCC-CUGGG- -5'
8947 3' -60 NC_002512.2 + 38691 0.67 0.832587
Target:  5'- aGACCGAgCCgaCGGAG-GaGACGGucGCCCa -3'
miRNA:   3'- -CUGGCU-GGa-GCCUCaC-CUGCCc-UGGG- -5'
8947 3' -60 NC_002512.2 + 93515 0.67 0.831809
Target:  5'- uGGCCGGCCcucCGGAuccagcuGUGGgagaacgucaGCGGG-CCCa -3'
miRNA:   3'- -CUGGCUGGa--GCCU-------CACC----------UGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 4621 0.67 0.831809
Target:  5'- -uUCGGCCugUCGGuggugaccuggacGGUGGugGGGAUCg -3'
miRNA:   3'- cuGGCUGG--AGCC-------------UCACCugCCCUGGg -5'
8947 3' -60 NC_002512.2 + 82205 0.67 0.824739
Target:  5'- gGGCCGGCgUccuccCGGGGcgGGaaGCGGGGCCg -3'
miRNA:   3'- -CUGGCUGgA-----GCCUCa-CC--UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 10931 0.67 0.824739
Target:  5'- aGCCGGCgaCGGAGgggucGACGaGGACgCCg -3'
miRNA:   3'- cUGGCUGgaGCCUCac---CUGC-CCUG-GG- -5'
8947 3' -60 NC_002512.2 + 45181 0.67 0.824739
Target:  5'- -gUCGuCCUCGGAGgucucGAcCGGGACCg -3'
miRNA:   3'- cuGGCuGGAGCCUCac---CU-GCCCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.