miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 130131 0.74 0.451514
Target:  5'- ---aGGCC-CGGGGUGGugucgcggccGCGGGGCCCg -3'
miRNA:   3'- cuggCUGGaGCCUCACC----------UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 102111 0.74 0.451514
Target:  5'- uGugCGGCCUCGGccGUcGGAgGGGgACCCu -3'
miRNA:   3'- -CugGCUGGAGCCu-CA-CCUgCCC-UGGG- -5'
8947 3' -60 NC_002512.2 + 6839 0.74 0.44047
Target:  5'- cGACCaggggcaccucccgGACCUcgcCGGAGUGGGCGacGACCCg -3'
miRNA:   3'- -CUGG--------------CUGGA---GCCUCACCUGCc-CUGGG- -5'
8947 3' -60 NC_002512.2 + 70693 0.75 0.370764
Target:  5'- gGACCGGCCgggCGGGGgacggggggacggggGGACGGGgggacgggagcgcGCCCg -3'
miRNA:   3'- -CUGGCUGGa--GCCUCa--------------CCUGCCC-------------UGGG- -5'
8947 3' -60 NC_002512.2 + 86220 0.77 0.313644
Target:  5'- -cCCGGCUUCGGGGagggGGACGaggaGGACCCg -3'
miRNA:   3'- cuGGCUGGAGCCUCa---CCUGC----CCUGGG- -5'
8947 3' -60 NC_002512.2 + 76603 0.7 0.654693
Target:  5'- gGACCGACCcagCGGAGccagccGACcaGGACCCg -3'
miRNA:   3'- -CUGGCUGGa--GCCUCac----CUGc-CCUGGG- -5'
8947 3' -60 NC_002512.2 + 135802 0.7 0.654693
Target:  5'- gGACCGGCCgccgccgucgCGGGG-GGAggaGGGuCCCg -3'
miRNA:   3'- -CUGGCUGGa---------GCCUCaCCUg--CCCuGGG- -5'
8947 3' -60 NC_002512.2 + 152118 0.68 0.748062
Target:  5'- -cCCGACC-CGGAGUcuGgGGGAUCCu -3'
miRNA:   3'- cuGGCUGGaGCCUCAccUgCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 118199 0.68 0.748062
Target:  5'- cGACCccgaGGCCgucuGGUGcGACGGGGCCCu -3'
miRNA:   3'- -CUGG----CUGGagccUCAC-CUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 62013 0.68 0.748062
Target:  5'- uGAUCGAaauacuUCUCGGcGUGGAUGGGGaucuuggccuCCCg -3'
miRNA:   3'- -CUGGCU------GGAGCCuCACCUGCCCU----------GGG- -5'
8947 3' -60 NC_002512.2 + 12109 0.69 0.739001
Target:  5'- aGCCGGCCgcgacccCGGcGacggGGACGGG-CCCg -3'
miRNA:   3'- cUGGCUGGa------GCCuCa---CCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 6322 0.69 0.739001
Target:  5'- uGGCCGccGCCcgCGGGGggaccgGGcGCGGGGCCg -3'
miRNA:   3'- -CUGGC--UGGa-GCCUCa-----CC-UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 75205 0.69 0.720643
Target:  5'- cGGCCG--CUCGGAGccGGACGGucGCCCg -3'
miRNA:   3'- -CUGGCugGAGCCUCa-CCUGCCc-UGGG- -5'
8947 3' -60 NC_002512.2 + 17033 0.69 0.711361
Target:  5'- ---gGACgCUCGGAGgggacGGACGGcGCCCg -3'
miRNA:   3'- cuggCUG-GAGCCUCa----CCUGCCcUGGG- -5'
8947 3' -60 NC_002512.2 + 11844 0.69 0.70202
Target:  5'- cGACgCGGCgaCGGGGagGGACGcggaGGACCCc -3'
miRNA:   3'- -CUG-GCUGgaGCCUCa-CCUGC----CCUGGG- -5'
8947 3' -60 NC_002512.2 + 95094 0.69 0.70202
Target:  5'- aGACCGGCgUCGGGcccggGGACgcggguGGGGCUCg -3'
miRNA:   3'- -CUGGCUGgAGCCUca---CCUG------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 97742 0.69 0.691687
Target:  5'- cACCGACCUCGaGGUGG-CGGucgucuugcucgcGGCCUa -3'
miRNA:   3'- cUGGCUGGAGCcUCACCuGCC-------------CUGGG- -5'
8947 3' -60 NC_002512.2 + 123934 0.7 0.683192
Target:  5'- gGGCUGGCCgUCaGAcucGUGccGGCGGGACCCu -3'
miRNA:   3'- -CUGGCUGG-AGcCU---CAC--CUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 3779 0.7 0.683192
Target:  5'- aGACgGACC-CGGAGUcGGACcGGAgcaguCCCg -3'
miRNA:   3'- -CUGgCUGGaGCCUCA-CCUGcCCU-----GGG- -5'
8947 3' -60 NC_002512.2 + 139387 0.7 0.66612
Target:  5'- cGCCGGCCUCGGccccgaucccgucgaGGACgccccggugaucgGGGACCCg -3'
miRNA:   3'- cUGGCUGGAGCCuca------------CCUG-------------CCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.