miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 127839 0.68 0.774684
Target:  5'- aACCG-CUcCGGAGUccGGAgCGGGAUCCc -3'
miRNA:   3'- cUGGCuGGaGCCUCA--CCU-GCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 128664 0.68 0.765911
Target:  5'- uGCCGGCgC-CGGAacccgGcGGACGGGGCCg -3'
miRNA:   3'- cUGGCUG-GaGCCU-----CaCCUGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 116888 0.68 0.765911
Target:  5'- cGGCUGGCggCGGGGccgGGGCGGGcUCCu -3'
miRNA:   3'- -CUGGCUGgaGCCUCa--CCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 7242 0.68 0.765911
Target:  5'- cGGCCGGCCgucgcggCGGAGcGGcguccguCGGGAUCg -3'
miRNA:   3'- -CUGGCUGGa------GCCUCaCCu------GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 76404 0.68 0.765911
Target:  5'- uGACCguGACgUCGGAaggGUGGGCGGaGACg- -3'
miRNA:   3'- -CUGG--CUGgAGCCU---CACCUGCC-CUGgg -5'
8947 3' -60 NC_002512.2 + 152118 0.68 0.748062
Target:  5'- -cCCGACC-CGGAGUcuGgGGGAUCCu -3'
miRNA:   3'- cuGGCUGGaGCCUCAccUgCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 118199 0.68 0.748062
Target:  5'- cGACCccgaGGCCgucuGGUGcGACGGGGCCCu -3'
miRNA:   3'- -CUGG----CUGGagccUCAC-CUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 95094 0.69 0.70202
Target:  5'- aGACCGGCgUCGGGcccggGGACgcggguGGGGCUCg -3'
miRNA:   3'- -CUGGCUGgAGCCUca---CCUG------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 11844 0.69 0.70202
Target:  5'- cGACgCGGCgaCGGGGagGGACGcggaGGACCCc -3'
miRNA:   3'- -CUG-GCUGgaGCCUCa-CCUGC----CCUGGG- -5'
8947 3' -60 NC_002512.2 + 17033 0.69 0.711361
Target:  5'- ---gGACgCUCGGAGgggacGGACGGcGCCCg -3'
miRNA:   3'- cuggCUG-GAGCCUCa----CCUGCCcUGGG- -5'
8947 3' -60 NC_002512.2 + 75205 0.69 0.720643
Target:  5'- cGGCCG--CUCGGAGccGGACGGucGCCCg -3'
miRNA:   3'- -CUGGCugGAGCCUCa-CCUGCCc-UGGG- -5'
8947 3' -60 NC_002512.2 + 6322 0.69 0.739001
Target:  5'- uGGCCGccGCCcgCGGGGggaccgGGcGCGGGGCCg -3'
miRNA:   3'- -CUGGC--UGGa-GCCUCa-----CC-UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 12109 0.69 0.739001
Target:  5'- aGCCGGCCgcgacccCGGcGacggGGACGGG-CCCg -3'
miRNA:   3'- cUGGCUGGa------GCCuCa---CCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 62013 0.68 0.748062
Target:  5'- uGAUCGAaauacuUCUCGGcGUGGAUGGGGaucuuggccuCCCg -3'
miRNA:   3'- -CUGGCU------GGAGCCuCACCUGCCCU----------GGG- -5'
8947 3' -60 NC_002512.2 + 90654 0.66 0.876139
Target:  5'- cGGCCGcggUCUCGGAGUcGGcggccGCGGcGGCCa -3'
miRNA:   3'- -CUGGCu--GGAGCCUCA-CC-----UGCC-CUGGg -5'
8947 3' -60 NC_002512.2 + 220302 0.66 0.876139
Target:  5'- cGCCGAgCCgcCGGGG-GGcCGGGGgCCg -3'
miRNA:   3'- cUGGCU-GGa-GCCUCaCCuGCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 200335 0.66 0.878811
Target:  5'- cGCCGGCgUccuccugucggcggaCGGGG-GGACGGGGCg- -3'
miRNA:   3'- cUGGCUGgA---------------GCCUCaCCUGCCCUGgg -5'
8947 3' -60 NC_002512.2 + 194267 0.66 0.882761
Target:  5'- cGGCCG-CCgaGGAGUGGAagaUGGcGGCCa -3'
miRNA:   3'- -CUGGCuGGagCCUCACCU---GCC-CUGGg -5'
8947 3' -60 NC_002512.2 + 201347 0.66 0.882761
Target:  5'- uGGCCGACaUCGGGc--GGCGGcgGACCCg -3'
miRNA:   3'- -CUGGCUGgAGCCUcacCUGCC--CUGGG- -5'
8947 3' -60 NC_002512.2 + 221181 1.12 0.001611
Target:  5'- cGACCGACCUCGGAGUGGACGGGACCCg -3'
miRNA:   3'- -CUGGCUGGAGCCUCACCUGCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.