miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 152118 0.68 0.748062
Target:  5'- -cCCGACC-CGGAGUcuGgGGGAUCCu -3'
miRNA:   3'- cuGGCUGGaGCCUCAccUgCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 166462 0.68 0.748062
Target:  5'- cGCCGGgCUCGaGGGcgGGgacgGCGGGACCg -3'
miRNA:   3'- cUGGCUgGAGC-CUCa-CC----UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 152189 0.68 0.748062
Target:  5'- gGACCGGgguCCUCGGAgaGUGGACcccGGuCCUg -3'
miRNA:   3'- -CUGGCU---GGAGCCU--CACCUGc--CCuGGG- -5'
8947 3' -60 NC_002512.2 + 118199 0.68 0.748062
Target:  5'- cGACCccgaGGCCgucuGGUGcGACGGGGCCCu -3'
miRNA:   3'- -CUGG----CUGGagccUCAC-CUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 130962 0.68 0.763259
Target:  5'- cGACCgccuuauaucgggaGACCUCGGAGgaggagaucGGGCGagcGGACCa -3'
miRNA:   3'- -CUGG--------------CUGGAGCCUCa--------CCUGC---CCUGGg -5'
8947 3' -60 NC_002512.2 + 223309 0.68 0.763259
Target:  5'- cGCCGGUCgacaccgugaacggUCGG-GaGGACGGGACCCu -3'
miRNA:   3'- cUGGCUGG--------------AGCCuCaCCUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 161531 0.68 0.765911
Target:  5'- cGCCGAgCC-CGGGGacUGGAUGGuGGCCg -3'
miRNA:   3'- cUGGCU-GGaGCCUC--ACCUGCC-CUGGg -5'
8947 3' -60 NC_002512.2 + 7242 0.68 0.765911
Target:  5'- cGGCCGGCCgucgcggCGGAGcGGcguccguCGGGAUCg -3'
miRNA:   3'- -CUGGCUGGa------GCCUCaCCu------GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 159356 0.68 0.765911
Target:  5'- uAUCGGCgUCGGGGUcGGggcgucccauucGCGGGuCCCg -3'
miRNA:   3'- cUGGCUGgAGCCUCA-CC------------UGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 128664 0.68 0.765911
Target:  5'- uGCCGGCgC-CGGAacccgGcGGACGGGGCCg -3'
miRNA:   3'- cUGGCUG-GaGCCU-----CaCCUGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 76404 0.68 0.765911
Target:  5'- uGACCguGACgUCGGAaggGUGGGCGGaGACg- -3'
miRNA:   3'- -CUGG--CUGgAGCCU---CACCUGCC-CUGgg -5'
8947 3' -60 NC_002512.2 + 116888 0.68 0.765911
Target:  5'- cGGCUGGCggCGGGGccgGGGCGGGcUCCu -3'
miRNA:   3'- -CUGGCUGgaGCCUCa--CCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 185548 0.68 0.765911
Target:  5'- uACCGGCCccgCGGcGUGGccgucgAgGGGACCUg -3'
miRNA:   3'- cUGGCUGGa--GCCuCACC------UgCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 153169 0.68 0.773812
Target:  5'- --gCGACCUaCGGggcggcgggcagcGGUGGGgagggcggcaccCGGGACCCg -3'
miRNA:   3'- cugGCUGGA-GCC-------------UCACCU------------GCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 46759 0.68 0.774684
Target:  5'- uGACCGGCUUCaGGuuGUGuuuCGGGGCCg -3'
miRNA:   3'- -CUGGCUGGAG-CCu-CACcu-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 188143 0.68 0.774684
Target:  5'- cGCCGAgCUCaucaAGUGGAuCGGGcCCCa -3'
miRNA:   3'- cUGGCUgGAGcc--UCACCU-GCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 124298 0.68 0.774684
Target:  5'- cGGCuCGACCgcgCGGAGcuGAuCGGGGCCg -3'
miRNA:   3'- -CUG-GCUGGa--GCCUCacCU-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 109041 0.68 0.774684
Target:  5'- gGACCGGgggggCUCGGGGgacGACcGGACCCg -3'
miRNA:   3'- -CUGGCUg----GAGCCUCac-CUGcCCUGGG- -5'
8947 3' -60 NC_002512.2 + 103302 0.68 0.774684
Target:  5'- aGCCGGCCgucguaGGAcaGGACGGccgaGGCCCg -3'
miRNA:   3'- cUGGCUGGag----CCUcaCCUGCC----CUGGG- -5'
8947 3' -60 NC_002512.2 + 127839 0.68 0.774684
Target:  5'- aACCG-CUcCGGAGUccGGAgCGGGAUCCc -3'
miRNA:   3'- cUGGCuGGaGCCUCA--CCU-GCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.