miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 160753 0.7 0.683192
Target:  5'- cGCCGGCCccgggcaCGGAGgucccGGAgCGGGGCCg -3'
miRNA:   3'- cUGGCUGGa------GCCUCa----CCU-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 150183 0.7 0.683192
Target:  5'- uGCCgGGCCUgGGGGgagagGGAucCGGGaACCCg -3'
miRNA:   3'- cUGG-CUGGAgCCUCa----CCU--GCCC-UGGG- -5'
8947 3' -60 NC_002512.2 + 133216 0.7 0.683192
Target:  5'- aGAUCGACCUCGuagaaGAG-GuGACGGccGGCCCg -3'
miRNA:   3'- -CUGGCUGGAGC-----CUCaC-CUGCC--CUGGG- -5'
8947 3' -60 NC_002512.2 + 3779 0.7 0.683192
Target:  5'- aGACgGACC-CGGAGUcGGACcGGAgcaguCCCg -3'
miRNA:   3'- -CUGgCUGGaGCCUCA-CCUGcCCU-----GGG- -5'
8947 3' -60 NC_002512.2 + 118300 0.7 0.683192
Target:  5'- gGACaaCGACCUgcaguacaucCGG-GUGGACGGGACg- -3'
miRNA:   3'- -CUG--GCUGGA----------GCCuCACCUGCCCUGgg -5'
8947 3' -60 NC_002512.2 + 97742 0.69 0.691687
Target:  5'- cACCGACCUCGaGGUGG-CGGucgucuugcucgcGGCCUa -3'
miRNA:   3'- cUGGCUGGAGCcUCACCuGCC-------------CUGGG- -5'
8947 3' -60 NC_002512.2 + 226454 0.69 0.692628
Target:  5'- cACCGACCagcccCGcGAGgcgGGAggaggcCGGGGCCCg -3'
miRNA:   3'- cUGGCUGGa----GC-CUCa--CCU------GCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 96729 0.69 0.70202
Target:  5'- gGGCCGGCCcgCGGGaaccGGacgagcgaGCGGGGCCCc -3'
miRNA:   3'- -CUGGCUGGa-GCCUca--CC--------UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 95094 0.69 0.70202
Target:  5'- aGACCGGCgUCGGGcccggGGACgcggguGGGGCUCg -3'
miRNA:   3'- -CUGGCUGgAGCCUca---CCUG------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 11844 0.69 0.70202
Target:  5'- cGACgCGGCgaCGGGGagGGACGcggaGGACCCc -3'
miRNA:   3'- -CUG-GCUGgaGCCUCa-CCUGC----CCUGGG- -5'
8947 3' -60 NC_002512.2 + 17033 0.69 0.711361
Target:  5'- ---gGACgCUCGGAGgggacGGACGGcGCCCg -3'
miRNA:   3'- cuggCUG-GAGCCUCa----CCUGCCcUGGG- -5'
8947 3' -60 NC_002512.2 + 89421 0.69 0.711361
Target:  5'- aACCaGGCCUCGGGcGUcGGCGGGgucacguccggGCCCa -3'
miRNA:   3'- cUGG-CUGGAGCCU-CAcCUGCCC-----------UGGG- -5'
8947 3' -60 NC_002512.2 + 75205 0.69 0.720643
Target:  5'- cGGCCG--CUCGGAGccGGACGGucGCCCg -3'
miRNA:   3'- -CUGGCugGAGCCUCa-CCUGCCc-UGGG- -5'
8947 3' -60 NC_002512.2 + 221249 0.69 0.720643
Target:  5'- cGGCCGGCCgcggCGGaAGUcGGgggacGCGGGGCgCg -3'
miRNA:   3'- -CUGGCUGGa---GCC-UCA-CC-----UGCCCUGgG- -5'
8947 3' -60 NC_002512.2 + 146795 0.69 0.720643
Target:  5'- cGCCgGACC-CGGAGgaGGccCGGGACCUg -3'
miRNA:   3'- cUGG-CUGGaGCCUCa-CCu-GCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 192572 0.69 0.729859
Target:  5'- uGGCCGggGCCUCGGAGcGGACcGu-CCCg -3'
miRNA:   3'- -CUGGC--UGGAGCCUCaCCUGcCcuGGG- -5'
8947 3' -60 NC_002512.2 + 207514 0.69 0.729859
Target:  5'- cGACCGACgaCGa---GGACGGGGCCg -3'
miRNA:   3'- -CUGGCUGgaGCcucaCCUGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 12109 0.69 0.739001
Target:  5'- aGCCGGCCgcgacccCGGcGacggGGACGGG-CCCg -3'
miRNA:   3'- cUGGCUGGa------GCCuCa---CCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 6322 0.69 0.739001
Target:  5'- uGGCCGccGCCcgCGGGGggaccgGGcGCGGGGCCg -3'
miRNA:   3'- -CUGGC--UGGa-GCCUCa-----CC-UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 118199 0.68 0.748062
Target:  5'- cGACCccgaGGCCgucuGGUGcGACGGGGCCCu -3'
miRNA:   3'- -CUGG----CUGGagccUCAC-CUGCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.