miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 157125 0.72 0.569038
Target:  5'- -cCCGGCgUCGGGGgucgGcGGCGGG-CCCg -3'
miRNA:   3'- cuGGCUGgAGCCUCa---C-CUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 223161 0.72 0.572808
Target:  5'- uACCGGCa-CGGAcaguucgucugguacGUGGACGGGccGCCCg -3'
miRNA:   3'- cUGGCUGgaGCCU---------------CACCUGCCC--UGGG- -5'
8947 3' -60 NC_002512.2 + 2794 0.71 0.578475
Target:  5'- -cCCGACC-CGGccGGcGGccgGCGGGACCCg -3'
miRNA:   3'- cuGGCUGGaGCC--UCaCC---UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 123133 0.71 0.597445
Target:  5'- cGGCCGuCC-CGGGGgacgGGGCGGcGGCgCCg -3'
miRNA:   3'- -CUGGCuGGaGCCUCa---CCUGCC-CUG-GG- -5'
8947 3' -60 NC_002512.2 + 15076 0.71 0.597445
Target:  5'- --gCGACuCUCGGAGacGGACcuccgcgaccagGGGACCCg -3'
miRNA:   3'- cugGCUG-GAGCCUCa-CCUG------------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 121025 0.71 0.597445
Target:  5'- uGCUGACCUCGGGcGagcgcgaccucUGGGcCGGGuACCCg -3'
miRNA:   3'- cUGGCUGGAGCCU-C-----------ACCU-GCCC-UGGG- -5'
8947 3' -60 NC_002512.2 + 148431 0.71 0.597445
Target:  5'- gGACCG-CCg-GGGGaGGACGGGGgCCg -3'
miRNA:   3'- -CUGGCuGGagCCUCaCCUGCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 118112 0.71 0.616503
Target:  5'- gGACCGGCCguaucgcugaCGGGGgaggGGGCGGGGgCg -3'
miRNA:   3'- -CUGGCUGGa---------GCCUCa---CCUGCCCUgGg -5'
8947 3' -60 NC_002512.2 + 205092 0.71 0.626051
Target:  5'- cGAuCCGuCCUCGGGG-GGcGCGcccGGACCCg -3'
miRNA:   3'- -CU-GGCuGGAGCCUCaCC-UGC---CCUGGG- -5'
8947 3' -60 NC_002512.2 + 222195 0.71 0.629872
Target:  5'- cGGCCGGCgUcguccguuucuucguCGGGGUGGccguCGGGGCCg -3'
miRNA:   3'- -CUGGCUGgA---------------GCCUCACCu---GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 35236 0.7 0.635603
Target:  5'- gGACCGcCCgaUCGGAGaagaGGACGGGcagguCCCc -3'
miRNA:   3'- -CUGGCuGG--AGCCUCa---CCUGCCCu----GGG- -5'
8947 3' -60 NC_002512.2 + 109854 0.7 0.645153
Target:  5'- gGACCGGCgUgGcGGcGGugGGGACCUa -3'
miRNA:   3'- -CUGGCUGgAgCcUCaCCugCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 195618 0.7 0.645153
Target:  5'- cGGCC-ACCUgcUGGAGacgGGACGGGACgaCCg -3'
miRNA:   3'- -CUGGcUGGA--GCCUCa--CCUGCCCUG--GG- -5'
8947 3' -60 NC_002512.2 + 157161 0.7 0.645153
Target:  5'- cGGCgGGCCgggCGGcGUGGGCGGcGGCgCg -3'
miRNA:   3'- -CUGgCUGGa--GCCuCACCUGCC-CUGgG- -5'
8947 3' -60 NC_002512.2 + 135802 0.7 0.654693
Target:  5'- gGACCGGCCgccgccgucgCGGGG-GGAggaGGGuCCCg -3'
miRNA:   3'- -CUGGCUGGa---------GCCUCaCCUg--CCCuGGG- -5'
8947 3' -60 NC_002512.2 + 35960 0.7 0.654693
Target:  5'- -cCCGGCCgucagCGGAGUccgGGACGcGAUCCg -3'
miRNA:   3'- cuGGCUGGa----GCCUCA---CCUGCcCUGGG- -5'
8947 3' -60 NC_002512.2 + 76603 0.7 0.654693
Target:  5'- gGACCGACCcagCGGAGccagccGACcaGGACCCg -3'
miRNA:   3'- -CUGGCUGGa--GCCUCac----CUGc-CCUGGG- -5'
8947 3' -60 NC_002512.2 + 139387 0.7 0.66612
Target:  5'- cGCCGGCCUCGGccccgaucccgucgaGGACgccccggugaucgGGGACCCg -3'
miRNA:   3'- cUGGCUGGAGCCuca------------CCUG-------------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 160753 0.7 0.683192
Target:  5'- cGCCGGCCccgggcaCGGAGgucccGGAgCGGGGCCg -3'
miRNA:   3'- cUGGCUGGa------GCCUCa----CCU-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 3779 0.7 0.683192
Target:  5'- aGACgGACC-CGGAGUcGGACcGGAgcaguCCCg -3'
miRNA:   3'- -CUGgCUGGaGCCUCA-CCUGcCCU-----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.