miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 35095 0.68 0.783346
Target:  5'- -cCCGGCucagcucccgCUCGGAguucccGUGGACGcGGACCa -3'
miRNA:   3'- cuGGCUG----------GAGCCU------CACCUGC-CCUGGg -5'
8947 3' -60 NC_002512.2 + 35236 0.7 0.635603
Target:  5'- gGACCGcCCgaUCGGAGaagaGGACGGGcagguCCCc -3'
miRNA:   3'- -CUGGCuGG--AGCCUCa---CCUGCCCu----GGG- -5'
8947 3' -60 NC_002512.2 + 35960 0.7 0.654693
Target:  5'- -cCCGGCCgucagCGGAGUccgGGACGcGAUCCg -3'
miRNA:   3'- cuGGCUGGa----GCCUCA---CCUGCcCUGGG- -5'
8947 3' -60 NC_002512.2 + 38691 0.67 0.832587
Target:  5'- aGACCGAgCCgaCGGAG-GaGACGGucGCCCa -3'
miRNA:   3'- -CUGGCU-GGa-GCCUCaC-CUGCCc-UGGG- -5'
8947 3' -60 NC_002512.2 + 39671 0.67 0.800308
Target:  5'- uGCCGACCga--AGUGuGGCaGGACCCg -3'
miRNA:   3'- cUGGCUGGagccUCAC-CUGcCCUGGG- -5'
8947 3' -60 NC_002512.2 + 45181 0.67 0.824739
Target:  5'- -gUCGuCCUCGGAGgucucGAcCGGGACCg -3'
miRNA:   3'- cuGGCuGGAGCCUCac---CU-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 46759 0.68 0.774684
Target:  5'- uGACCGGCUUCaGGuuGUGuuuCGGGGCCg -3'
miRNA:   3'- -CUGGCUGGAG-CCu-CACcu-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 50590 0.67 0.800308
Target:  5'- cGCCGcCCgCGGAcUGGACGGugcGAUCCg -3'
miRNA:   3'- cUGGCuGGaGCCUcACCUGCC---CUGGG- -5'
8947 3' -60 NC_002512.2 + 50868 0.67 0.808593
Target:  5'- -cCCGACgUCGGAGaaGGAcaCGGGAaCCa -3'
miRNA:   3'- cuGGCUGgAGCCUCa-CCU--GCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 52529 0.72 0.522529
Target:  5'- cGAUCGACCUaagGGGGacGGCGGuGACCCu -3'
miRNA:   3'- -CUGGCUGGAg--CCUCacCUGCC-CUGGG- -5'
8947 3' -60 NC_002512.2 + 59433 0.66 0.882761
Target:  5'- uGugCG-CCaUCGuGAGcaucugccUGcGGCGGGACCCg -3'
miRNA:   3'- -CugGCuGG-AGC-CUC--------AC-CUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 62013 0.68 0.748062
Target:  5'- uGAUCGAaauacuUCUCGGcGUGGAUGGGGaucuuggccuCCCg -3'
miRNA:   3'- -CUGGCU------GGAGCCuCACCUGCCCU----------GGG- -5'
8947 3' -60 NC_002512.2 + 66192 0.66 0.869328
Target:  5'- cGACCGGCacgcauUCGGAcaGGGCGaGGAcgucCCCg -3'
miRNA:   3'- -CUGGCUGg-----AGCCUcaCCUGC-CCU----GGG- -5'
8947 3' -60 NC_002512.2 + 68924 0.66 0.862331
Target:  5'- cGCCGcgGCCUCGGGG-GGAuccccccuCGuGACCCc -3'
miRNA:   3'- cUGGC--UGGAGCCUCaCCU--------GCcCUGGG- -5'
8947 3' -60 NC_002512.2 + 70693 0.75 0.370764
Target:  5'- gGACCGGCCgggCGGGGgacggggggacggggGGACGGGgggacgggagcgcGCCCg -3'
miRNA:   3'- -CUGGCUGGa--GCCUCa--------------CCUGCCC-------------UGGG- -5'
8947 3' -60 NC_002512.2 + 72766 0.67 0.816739
Target:  5'- cGCCGACCcCcgacgccgGGAGggacgucgccgGGACGGG-CCCg -3'
miRNA:   3'- cUGGCUGGaG--------CCUCa----------CCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 75205 0.69 0.720643
Target:  5'- cGGCCG--CUCGGAGccGGACGGucGCCCg -3'
miRNA:   3'- -CUGGCugGAGCCUCa-CCUGCCc-UGGG- -5'
8947 3' -60 NC_002512.2 + 76404 0.68 0.765911
Target:  5'- uGACCguGACgUCGGAaggGUGGGCGGaGACg- -3'
miRNA:   3'- -CUGG--CUGgAGCCU---CACCUGCC-CUGgg -5'
8947 3' -60 NC_002512.2 + 76599 0.67 0.840276
Target:  5'- cGCCGGCgUCGGAcgucUGucCGGGGCCg -3'
miRNA:   3'- cUGGCUGgAGCCUc---ACcuGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 76603 0.7 0.654693
Target:  5'- gGACCGACCcagCGGAGccagccGACcaGGACCCg -3'
miRNA:   3'- -CUGGCUGGa--GCCUCac----CUGc-CCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.