miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 221181 1.12 0.001611
Target:  5'- cGACCGACCUCGGAGUGGACGGGACCCg -3'
miRNA:   3'- -CUGGCUGGAGCCUCACCUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 220768 0.67 0.840276
Target:  5'- aGGCCGACgUCGGGuccaUGGACcugcugGGGAUCg -3'
miRNA:   3'- -CUGGCUGgAGCCUc---ACCUG------CCCUGGg -5'
8947 3' -60 NC_002512.2 + 220570 0.67 0.840276
Target:  5'- uGGCCGugCgccgcccgaUGGAGUGc-CGGGAUCCg -3'
miRNA:   3'- -CUGGCugGa--------GCCUCACcuGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 220302 0.66 0.876139
Target:  5'- cGCCGAgCCgcCGGGG-GGcCGGGGgCCg -3'
miRNA:   3'- cUGGCU-GGa-GCCUCaCCuGCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 219220 0.76 0.363248
Target:  5'- gGGCCGGCCUCGGcGaGGuCGGGAUCg -3'
miRNA:   3'- -CUGGCUGGAGCCuCaCCuGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 218288 0.67 0.816739
Target:  5'- -cUCGGCCUCGGGGUccccggcccuGGGCGGccGCUCg -3'
miRNA:   3'- cuGGCUGGAGCCUCA----------CCUGCCc-UGGG- -5'
8947 3' -60 NC_002512.2 + 217595 0.66 0.865152
Target:  5'- cGCCG-CCUCGGGGgucgucggcgacucGGGCGGcGCCa -3'
miRNA:   3'- cUGGCuGGAGCCUCa-------------CCUGCCcUGGg -5'
8947 3' -60 NC_002512.2 + 214987 0.67 0.840276
Target:  5'- cGCCGACCUCGGGaUGcccguCGGGgaGCUCa -3'
miRNA:   3'- cUGGCUGGAGCCUcACcu---GCCC--UGGG- -5'
8947 3' -60 NC_002512.2 + 212499 0.81 0.166324
Target:  5'- -uCCGACCUCGGGcUGGACGcGGACCa -3'
miRNA:   3'- cuGGCUGGAGCCUcACCUGC-CCUGGg -5'
8947 3' -60 NC_002512.2 + 208870 0.74 0.417217
Target:  5'- aAUCGGCaCUCGGGG-GGACGGGAggggccgggaaucCCCg -3'
miRNA:   3'- cUGGCUG-GAGCCUCaCCUGCCCU-------------GGG- -5'
8947 3' -60 NC_002512.2 + 208672 0.66 0.869328
Target:  5'- cGGgCGGCgUccCGGGGgccgcugucccUGGACGGGuACCCg -3'
miRNA:   3'- -CUgGCUGgA--GCCUC-----------ACCUGCCC-UGGG- -5'
8947 3' -60 NC_002512.2 + 207514 0.69 0.729859
Target:  5'- cGACCGACgaCGa---GGACGGGGCCg -3'
miRNA:   3'- -CUGGCUGgaGCcucaCCUGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 205314 0.66 0.876139
Target:  5'- cGACgGACCgggagGGAGggaGGAgCGGGAUCUc -3'
miRNA:   3'- -CUGgCUGGag---CCUCa--CCU-GCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 205092 0.71 0.626051
Target:  5'- cGAuCCGuCCUCGGGG-GGcGCGcccGGACCCg -3'
miRNA:   3'- -CU-GGCuGGAGCCUCaCC-UGC---CCUGGG- -5'
8947 3' -60 NC_002512.2 + 204720 0.72 0.540977
Target:  5'- cGGCgGGCC-CGGGGcgggGGGCcGGACCCg -3'
miRNA:   3'- -CUGgCUGGaGCCUCa---CCUGcCCUGGG- -5'
8947 3' -60 NC_002512.2 + 202002 0.67 0.800308
Target:  5'- uGGCuCG-UCUCGGAcagGUGG-CGGGGCCg -3'
miRNA:   3'- -CUG-GCuGGAGCCU---CACCuGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 201347 0.66 0.882761
Target:  5'- uGGCCGACaUCGGGc--GGCGGcgGACCCg -3'
miRNA:   3'- -CUGGCUGgAGCCUcacCUGCC--CUGGG- -5'
8947 3' -60 NC_002512.2 + 200335 0.66 0.878811
Target:  5'- cGCCGGCgUccuccugucggcggaCGGGG-GGACGGGGCg- -3'
miRNA:   3'- cUGGCUGgA---------------GCCUCaCCUGCCCUGgg -5'
8947 3' -60 NC_002512.2 + 197869 0.78 0.275348
Target:  5'- aACCGACUgCGGGGcaaGuGACGGGACCCg -3'
miRNA:   3'- cUGGCUGGaGCCUCa--C-CUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 195618 0.7 0.645153
Target:  5'- cGGCC-ACCUgcUGGAGacgGGACGGGACgaCCg -3'
miRNA:   3'- -CUGGcUGGA--GCCUCa--CCUGCCCUG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.