Results 21 - 40 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8947 | 3' | -60 | NC_002512.2 | + | 227962 | 0.66 | 0.855153 |
Target: 5'- gGACCGAaagCGGA-UGGACGGGAg-- -3' miRNA: 3'- -CUGGCUggaGCCUcACCUGCCCUggg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 100249 | 0.66 | 0.8478 |
Target: 5'- cGACCGcguCCUCGGAGagcgggagGaGACGGaGCUCg -3' miRNA: 3'- -CUGGCu--GGAGCCUCa-------C-CUGCCcUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 94049 | 0.66 | 0.862331 |
Target: 5'- uGACggCGACCg-GGAagGGcGCGGGACCCu -3' miRNA: 3'- -CUG--GCUGGagCCUcaCC-UGCCCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 122619 | 0.66 | 0.8478 |
Target: 5'- --gCGGCCUCGGuccgGGUGaACGcGGACCg -3' miRNA: 3'- cugGCUGGAGCC----UCACcUGC-CCUGGg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 185646 | 0.66 | 0.862331 |
Target: 5'- -uCCGACCUCcuGGG-GGACgucgcgGGGAUCCu -3' miRNA: 3'- cuGGCUGGAGc-CUCaCCUG------CCCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 117097 | 0.66 | 0.869328 |
Target: 5'- gGGCCGcCCUggaccCGGcacAGcGGcACGGGGCCCc -3' miRNA: 3'- -CUGGCuGGA-----GCC---UCaCC-UGCCCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 186528 | 0.66 | 0.8478 |
Target: 5'- -gUCGACCUCuGcGUGcACGGGGCCg -3' miRNA: 3'- cuGGCUGGAGcCuCACcUGCCCUGGg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 208672 | 0.66 | 0.869328 |
Target: 5'- cGGgCGGCgUccCGGGGgccgcugucccUGGACGGGuACCCg -3' miRNA: 3'- -CUgGCUGgA--GCCUC-----------ACCUGCCC-UGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 226390 | 0.66 | 0.862331 |
Target: 5'- gGGCCGACgaCGGc---GcCGGGACCCg -3' miRNA: 3'- -CUGGCUGgaGCCucacCuGCCCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 112897 | 0.66 | 0.855153 |
Target: 5'- cGugCGGCCgUCGGcccgcccGGACGGGgcgucggcgGCCCg -3' miRNA: 3'- -CugGCUGG-AGCCuca----CCUGCCC---------UGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 100806 | 0.66 | 0.869328 |
Target: 5'- -cCCGuCCUCGGGGUcgaccuGGACGaGGAUg- -3' miRNA: 3'- cuGGCuGGAGCCUCA------CCUGC-CCUGgg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 223248 | 0.66 | 0.854426 |
Target: 5'- -uUCGAcuCCUCGGGcGUccgcgucgucgggGGGCGGGACgCCg -3' miRNA: 3'- cuGGCU--GGAGCCU-CA-------------CCUGCCCUG-GG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 150560 | 0.66 | 0.862331 |
Target: 5'- --gCGACCUgGGAGgggaggaGGAgCGGGGCgCg -3' miRNA: 3'- cugGCUGGAgCCUCa------CCU-GCCCUGgG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 149437 | 0.66 | 0.876139 |
Target: 5'- gGGCgGGCg-CGGGGggagaGGAagGGGACCCg -3' miRNA: 3'- -CUGgCUGgaGCCUCa----CCUg-CCCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 217595 | 0.66 | 0.865152 |
Target: 5'- cGCCG-CCUCGGGGgucgucggcgacucGGGCGGcGCCa -3' miRNA: 3'- cUGGCuGGAGCCUCa-------------CCUGCCcUGGg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 27847 | 0.66 | 0.8478 |
Target: 5'- cGACaCGACCgcgagcCGGAccGGcGgGGGACCCg -3' miRNA: 3'- -CUG-GCUGGa-----GCCUcaCC-UgCCCUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 138113 | 0.66 | 0.855153 |
Target: 5'- cGCUGGcCCUgGGGGUGaaGGCGGaGAUCCc -3' miRNA: 3'- cUGGCU-GGAgCCUCAC--CUGCC-CUGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 130589 | 0.66 | 0.8478 |
Target: 5'- aGGCCGcgGCCUCGGAGgcggagGaGACGaagaGCCCg -3' miRNA: 3'- -CUGGC--UGGAGCCUCa-----C-CUGCcc--UGGG- -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 225504 | 0.66 | 0.865152 |
Target: 5'- gGGCCG-CCgCGGGGgucccgggcuucgcGGACGGGACg- -3' miRNA: 3'- -CUGGCuGGaGCCUCa-------------CCUGCCCUGgg -5' |
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8947 | 3' | -60 | NC_002512.2 | + | 205314 | 0.66 | 0.876139 |
Target: 5'- cGACgGACCgggagGGAGggaGGAgCGGGAUCUc -3' miRNA: 3'- -CUGgCUGGag---CCUCa--CCU-GCCCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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