miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 200335 0.66 0.878811
Target:  5'- cGCCGGCgUccuccugucggcggaCGGGG-GGACGGGGCg- -3'
miRNA:   3'- cUGGCUGgA---------------GCCUCaCCUGCCCUGgg -5'
8947 3' -60 NC_002512.2 + 59433 0.66 0.882761
Target:  5'- uGugCG-CCaUCGuGAGcaucugccUGcGGCGGGACCCg -3'
miRNA:   3'- -CugGCuGG-AGC-CUC--------AC-CUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 82205 0.67 0.824739
Target:  5'- gGGCCGGCgUccuccCGGGGcgGGaaGCGGGGCCg -3'
miRNA:   3'- -CUGGCUGgA-----GCCUCa-CC--UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 45181 0.67 0.824739
Target:  5'- -gUCGuCCUCGGAGgucucGAcCGGGACCg -3'
miRNA:   3'- cuGGCuGGAGCCUCac---CU-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 93515 0.67 0.831809
Target:  5'- uGGCCGGCCcucCGGAuccagcuGUGGgagaacgucaGCGGG-CCCa -3'
miRNA:   3'- -CUGGCUGGa--GCCU-------CACC----------UGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 38691 0.67 0.832587
Target:  5'- aGACCGAgCCgaCGGAG-GaGACGGucGCCCa -3'
miRNA:   3'- -CUGGCU-GGa-GCCUCaC-CUGCCc-UGGG- -5'
8947 3' -60 NC_002512.2 + 128583 0.67 0.832587
Target:  5'- gGGCCGACCcugCGaGAGgccgGGAcgucCGGGuACCUg -3'
miRNA:   3'- -CUGGCUGGa--GC-CUCa---CCU----GCCC-UGGG- -5'
8947 3' -60 NC_002512.2 + 86260 0.67 0.837986
Target:  5'- gGGCCGAgg-CGGGGagGGACgaacgccggagacgGGGGCCCg -3'
miRNA:   3'- -CUGGCUggaGCCUCa-CCUG--------------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 111988 0.67 0.840276
Target:  5'- cGCUGGCCgUGGAGcagcGACGGGcCCCc -3'
miRNA:   3'- cUGGCUGGaGCCUCac--CUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 10931 0.67 0.824739
Target:  5'- aGCCGGCgaCGGAGgggucGACGaGGACgCCg -3'
miRNA:   3'- cUGGCUGgaGCCUCac---CUGC-CCUG-GG- -5'
8947 3' -60 NC_002512.2 + 9467 0.67 0.824739
Target:  5'- cGGCUGGCCguaGGc--GGGCGGG-CCCg -3'
miRNA:   3'- -CUGGCUGGag-CCucaCCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 116379 0.67 0.824739
Target:  5'- uGCUGGCCcugCGGuccccgGGGCGGGucGCCCu -3'
miRNA:   3'- cUGGCUGGa--GCCuca---CCUGCCC--UGGG- -5'
8947 3' -60 NC_002512.2 + 50590 0.67 0.800308
Target:  5'- cGCCGcCCgCGGAcUGGACGGugcGAUCCg -3'
miRNA:   3'- cUGGCuGGaGCCUcACCUGCC---CUGGG- -5'
8947 3' -60 NC_002512.2 + 107494 0.67 0.800308
Target:  5'- cGACCGGCCcgcagCGGucucUGcGGCuGGACCCg -3'
miRNA:   3'- -CUGGCUGGa----GCCuc--AC-CUGcCCUGGG- -5'
8947 3' -60 NC_002512.2 + 116689 0.67 0.808593
Target:  5'- -cCCGGCUcccgcucgCGGAGcGGACGGcGACgCCg -3'
miRNA:   3'- cuGGCUGGa-------GCCUCaCCUGCC-CUG-GG- -5'
8947 3' -60 NC_002512.2 + 5094 0.67 0.808593
Target:  5'- cGCCGGCgUCGGcGcGGGCGGGAg-- -3'
miRNA:   3'- cUGGCUGgAGCCuCaCCUGCCCUggg -5'
8947 3' -60 NC_002512.2 + 124990 0.67 0.816739
Target:  5'- uGCagGGCgUCGGAGUGcauCGGGGCCa -3'
miRNA:   3'- cUGg-CUGgAGCCUCACcu-GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 72766 0.67 0.816739
Target:  5'- cGCCGACCcCcgacgccgGGAGggacgucgccgGGACGGG-CCCg -3'
miRNA:   3'- cUGGCUGGaG--------CCUCa----------CCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 102900 0.67 0.816739
Target:  5'- cGACCcGCgCUgGGAGaGGAcCGcGGACCCc -3'
miRNA:   3'- -CUGGcUG-GAgCCUCaCCU-GC-CCUGGG- -5'
8947 3' -60 NC_002512.2 + 138026 0.67 0.816739
Target:  5'- gGACggCGGCCUCGGGGgcaUGaGcCGGGACUg -3'
miRNA:   3'- -CUG--GCUGGAGCCUC---AC-CuGCCCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.