miRNA display CGI


Results 41 - 60 of 168 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 78326 0.79 0.225044
Target:  5'- cGCCGGCuCUCGGgaAGgcgagaccgGGACGGGACCCc -3'
miRNA:   3'- cUGGCUG-GAGCC--UCa--------CCUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 82205 0.67 0.824739
Target:  5'- gGGCCGGCgUccuccCGGGGcgGGaaGCGGGGCCg -3'
miRNA:   3'- -CUGGCUGgA-----GCCUCa-CC--UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 86220 0.77 0.313644
Target:  5'- -cCCGGCUUCGGGGagggGGACGaggaGGACCCg -3'
miRNA:   3'- cuGGCUGGAGCCUCa---CCUGC----CCUGGG- -5'
8947 3' -60 NC_002512.2 + 86260 0.67 0.837986
Target:  5'- gGGCCGAgg-CGGGGagGGACgaacgccggagacgGGGGCCCg -3'
miRNA:   3'- -CUGGCUggaGCCUCa-CCUG--------------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 89421 0.69 0.711361
Target:  5'- aACCaGGCCUCGGGcGUcGGCGGGgucacguccggGCCCa -3'
miRNA:   3'- cUGG-CUGGAGCCU-CAcCUGCCC-----------UGGG- -5'
8947 3' -60 NC_002512.2 + 89870 0.67 0.835682
Target:  5'- uGAUCGuaguggcucuccagcGCCUCGGucUGGGuCGGcGACCCc -3'
miRNA:   3'- -CUGGC---------------UGGAGCCucACCU-GCC-CUGGG- -5'
8947 3' -60 NC_002512.2 + 90654 0.66 0.876139
Target:  5'- cGGCCGcggUCUCGGAGUcGGcggccGCGGcGGCCa -3'
miRNA:   3'- -CUGGCu--GGAGCCUCA-CC-----UGCC-CUGGg -5'
8947 3' -60 NC_002512.2 + 93515 0.67 0.831809
Target:  5'- uGGCCGGCCcucCGGAuccagcuGUGGgagaacgucaGCGGG-CCCa -3'
miRNA:   3'- -CUGGCUGGa--GCCU-------CACC----------UGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 94049 0.66 0.862331
Target:  5'- uGACggCGACCg-GGAagGGcGCGGGACCCu -3'
miRNA:   3'- -CUG--GCUGGagCCUcaCC-UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 94574 0.81 0.187085
Target:  5'- cGCCGACCUCGGGGaccgccGGACaggcgaacuGGGGCCCg -3'
miRNA:   3'- cUGGCUGGAGCCUCa-----CCUG---------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 95094 0.69 0.70202
Target:  5'- aGACCGGCgUCGGGcccggGGACgcggguGGGGCUCg -3'
miRNA:   3'- -CUGGCUGgAGCCUca---CCUG------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 96406 0.68 0.791889
Target:  5'- gGGCCGAgugguUCUCGGggaggaagcAGUGGAC-GGACCa -3'
miRNA:   3'- -CUGGCU-----GGAGCC---------UCACCUGcCCUGGg -5'
8947 3' -60 NC_002512.2 + 96526 0.66 0.862331
Target:  5'- aGCCGcGCCggCGGuGUGaGcCGGGGCCg -3'
miRNA:   3'- cUGGC-UGGa-GCCuCAC-CuGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 96729 0.69 0.70202
Target:  5'- gGGCCGGCCcgCGGGaaccGGacgagcgaGCGGGGCCCc -3'
miRNA:   3'- -CUGGCUGGa-GCCUca--CC--------UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 97742 0.69 0.691687
Target:  5'- cACCGACCUCGaGGUGG-CGGucgucuugcucgcGGCCUa -3'
miRNA:   3'- cUGGCUGGAGCcUCACCuGCC-------------CUGGG- -5'
8947 3' -60 NC_002512.2 + 98318 0.66 0.876139
Target:  5'- -cCCGAggggCUCGGGGccggGGACGGGgaggggggcgGCCCc -3'
miRNA:   3'- cuGGCUg---GAGCCUCa---CCUGCCC----------UGGG- -5'
8947 3' -60 NC_002512.2 + 100249 0.66 0.8478
Target:  5'- cGACCGcguCCUCGGAGagcgggagGaGACGGaGCUCg -3'
miRNA:   3'- -CUGGCu--GGAGCCUCa-------C-CUGCCcUGGG- -5'
8947 3' -60 NC_002512.2 + 100806 0.66 0.869328
Target:  5'- -cCCGuCCUCGGGGUcgaccuGGACGaGGAUg- -3'
miRNA:   3'- cuGGCuGGAGCCUCA------CCUGC-CCUGgg -5'
8947 3' -60 NC_002512.2 + 102066 0.68 0.791889
Target:  5'- --aCGACCUccCGGAGc---CGGGACCCg -3'
miRNA:   3'- cugGCUGGA--GCCUCaccuGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 102111 0.74 0.451514
Target:  5'- uGugCGGCCUCGGccGUcGGAgGGGgACCCu -3'
miRNA:   3'- -CugGCUGGAGCCu-CA-CCUgCCC-UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.