miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 26192 0.66 0.882761
Target:  5'- cGACCGAUCUUaaauacagugggGGAccaccGUGGcgacggagACGGGACCg -3'
miRNA:   3'- -CUGGCUGGAG------------CCU-----CACC--------UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 98318 0.66 0.876139
Target:  5'- -cCCGAggggCUCGGGGccggGGACGGGgaggggggcgGCCCc -3'
miRNA:   3'- cuGGCUg---GAGCCUCa---CCUGCCC----------UGGG- -5'
8947 3' -60 NC_002512.2 + 201347 0.66 0.882761
Target:  5'- uGGCCGACaUCGGGc--GGCGGcgGACCCg -3'
miRNA:   3'- -CUGGCUGgAGCCUcacCUGCC--CUGGG- -5'
8947 3' -60 NC_002512.2 + 100249 0.66 0.8478
Target:  5'- cGACCGcguCCUCGGAGagcgggagGaGACGGaGCUCg -3'
miRNA:   3'- -CUGGCu--GGAGCCUCa-------C-CUGCCcUGGG- -5'
8947 3' -60 NC_002512.2 + 8296 0.66 0.858046
Target:  5'- cACCGACCccccuccgggucgaCGGAGcagGGcCGGGAgCCg -3'
miRNA:   3'- cUGGCUGGa-------------GCCUCa--CCuGCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 130463 0.66 0.869328
Target:  5'- cGGCUGAgcguCCUgGGuc-GGuCGGGGCCCg -3'
miRNA:   3'- -CUGGCU----GGAgCCucaCCuGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 59433 0.66 0.882761
Target:  5'- uGugCG-CCaUCGuGAGcaucugccUGcGGCGGGACCCg -3'
miRNA:   3'- -CugGCuGG-AGC-CUC--------AC-CUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 27847 0.66 0.8478
Target:  5'- cGACaCGACCgcgagcCGGAccGGcGgGGGACCCg -3'
miRNA:   3'- -CUG-GCUGGa-----GCCUcaCC-UgCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 154628 0.66 0.876139
Target:  5'- cGCCG-CCaUCGuGG-GGACGGGACgCg -3'
miRNA:   3'- cUGGCuGG-AGCcUCaCCUGCCCUGgG- -5'
8947 3' -60 NC_002512.2 + 225412 0.66 0.882761
Target:  5'- cGCCGGggUCGGGGUcgGGuuGGGGCCg -3'
miRNA:   3'- cUGGCUggAGCCUCA--CCugCCCUGGg -5'
8947 3' -60 NC_002512.2 + 5183 0.66 0.862331
Target:  5'- cGGCCGGCCccagCaGGGcGGGCaGGACCg -3'
miRNA:   3'- -CUGGCUGGa---GcCUCaCCUGcCCUGGg -5'
8947 3' -60 NC_002512.2 + 141050 0.66 0.882761
Target:  5'- cACCGAUCUCGaGAugGUGuGCGGGuCCg -3'
miRNA:   3'- cUGGCUGGAGC-CU--CACcUGCCCuGGg -5'
8947 3' -60 NC_002512.2 + 103167 0.66 0.862331
Target:  5'- cGCCGcGCC-CGGcGaGGACGaGGACCUg -3'
miRNA:   3'- cUGGC-UGGaGCCuCaCCUGC-CCUGGG- -5'
8947 3' -60 NC_002512.2 + 2321 0.66 0.869328
Target:  5'- cGCCGGCggucCGGAGgccucGGuCGcGGACCCg -3'
miRNA:   3'- cUGGCUGga--GCCUCa----CCuGC-CCUGGG- -5'
8947 3' -60 NC_002512.2 + 227962 0.66 0.855153
Target:  5'- gGACCGAaagCGGA-UGGACGGGAg-- -3'
miRNA:   3'- -CUGGCUggaGCCUcACCUGCCCUggg -5'
8947 3' -60 NC_002512.2 + 66192 0.66 0.869328
Target:  5'- cGACCGGCacgcauUCGGAcaGGGCGaGGAcgucCCCg -3'
miRNA:   3'- -CUGGCUGg-----AGCCUcaCCUGC-CCU----GGG- -5'
8947 3' -60 NC_002512.2 + 194267 0.66 0.882761
Target:  5'- cGGCCG-CCgaGGAGUGGAagaUGGcGGCCa -3'
miRNA:   3'- -CUGGCuGGagCCUCACCU---GCC-CUGGg -5'
8947 3' -60 NC_002512.2 + 220302 0.66 0.876139
Target:  5'- cGCCGAgCCgcCGGGG-GGcCGGGGgCCg -3'
miRNA:   3'- cUGGCU-GGa-GCCUCaCCuGCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 68924 0.66 0.862331
Target:  5'- cGCCGcgGCCUCGGGG-GGAuccccccuCGuGACCCc -3'
miRNA:   3'- cUGGC--UGGAGCCUCaCCU--------GCcCUGGG- -5'
8947 3' -60 NC_002512.2 + 200335 0.66 0.878811
Target:  5'- cGCCGGCgUccuccugucggcggaCGGGG-GGACGGGGCg- -3'
miRNA:   3'- cUGGCUGgA---------------GCCUCaCCUGCCCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.