miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 2290 0.72 0.550284
Target:  5'- -uCCGGCCgcugCGG-GUGG-CGGGGCUCu -3'
miRNA:   3'- cuGGCUGGa---GCCuCACCuGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 2321 0.66 0.869328
Target:  5'- cGCCGGCggucCGGAGgccucGGuCGcGGACCCg -3'
miRNA:   3'- cUGGCUGga--GCCUCa----CCuGC-CCUGGG- -5'
8947 3' -60 NC_002512.2 + 2794 0.71 0.578475
Target:  5'- -cCCGACC-CGGccGGcGGccgGCGGGACCCg -3'
miRNA:   3'- cuGGCUGGaGCC--UCaCC---UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 3779 0.7 0.683192
Target:  5'- aGACgGACC-CGGAGUcGGACcGGAgcaguCCCg -3'
miRNA:   3'- -CUGgCUGGaGCCUCA-CCUGcCCU-----GGG- -5'
8947 3' -60 NC_002512.2 + 4621 0.67 0.831809
Target:  5'- -uUCGGCCugUCGGuggugaccuggacGGUGGugGGGAUCg -3'
miRNA:   3'- cuGGCUGG--AGCC-------------UCACCugCCCUGGg -5'
8947 3' -60 NC_002512.2 + 5094 0.67 0.808593
Target:  5'- cGCCGGCgUCGGcGcGGGCGGGAg-- -3'
miRNA:   3'- cUGGCUGgAGCCuCaCCUGCCCUggg -5'
8947 3' -60 NC_002512.2 + 5183 0.66 0.862331
Target:  5'- cGGCCGGCCccagCaGGGcGGGCaGGACCg -3'
miRNA:   3'- -CUGGCUGGa---GcCUCaCCUGcCCUGGg -5'
8947 3' -60 NC_002512.2 + 6322 0.69 0.739001
Target:  5'- uGGCCGccGCCcgCGGGGggaccgGGcGCGGGGCCg -3'
miRNA:   3'- -CUGGC--UGGa-GCCUCa-----CC-UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 6839 0.74 0.44047
Target:  5'- cGACCaggggcaccucccgGACCUcgcCGGAGUGGGCGacGACCCg -3'
miRNA:   3'- -CUGG--------------CUGGA---GCCUCACCUGCc-CUGGG- -5'
8947 3' -60 NC_002512.2 + 7242 0.68 0.765911
Target:  5'- cGGCCGGCCgucgcggCGGAGcGGcguccguCGGGAUCg -3'
miRNA:   3'- -CUGGCUGGa------GCCUCaCCu------GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 8296 0.66 0.858046
Target:  5'- cACCGACCccccuccgggucgaCGGAGcagGGcCGGGAgCCg -3'
miRNA:   3'- cUGGCUGGa-------------GCCUCa--CCuGCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 9467 0.67 0.824739
Target:  5'- cGGCUGGCCguaGGc--GGGCGGG-CCCg -3'
miRNA:   3'- -CUGGCUGGag-CCucaCCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 10931 0.67 0.824739
Target:  5'- aGCCGGCgaCGGAGgggucGACGaGGACgCCg -3'
miRNA:   3'- cUGGCUGgaGCCUCac---CUGC-CCUG-GG- -5'
8947 3' -60 NC_002512.2 + 11429 0.68 0.791889
Target:  5'- uGACCGcgguCCgCGGGGacgccgcGGACGGGGgCCg -3'
miRNA:   3'- -CUGGCu---GGaGCCUCa------CCUGCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 11844 0.69 0.70202
Target:  5'- cGACgCGGCgaCGGGGagGGACGcggaGGACCCc -3'
miRNA:   3'- -CUG-GCUGgaGCCUCa-CCUGC----CCUGGG- -5'
8947 3' -60 NC_002512.2 + 12109 0.69 0.739001
Target:  5'- aGCCGGCCgcgacccCGGcGacggGGACGGG-CCCg -3'
miRNA:   3'- cUGGCUGGa------GCCuCa---CCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 15076 0.71 0.597445
Target:  5'- --gCGACuCUCGGAGacGGACcuccgcgaccagGGGACCCg -3'
miRNA:   3'- cugGCUG-GAGCCUCa-CCUG------------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 17033 0.69 0.711361
Target:  5'- ---gGACgCUCGGAGgggacGGACGGcGCCCg -3'
miRNA:   3'- cuggCUG-GAGCCUCa----CCUGCCcUGGG- -5'
8947 3' -60 NC_002512.2 + 26192 0.66 0.882761
Target:  5'- cGACCGAUCUUaaauacagugggGGAccaccGUGGcgacggagACGGGACCg -3'
miRNA:   3'- -CUGGCUGGAG------------CCU-----CACC--------UGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 27847 0.66 0.8478
Target:  5'- cGACaCGACCgcgagcCGGAccGGcGgGGGACCCg -3'
miRNA:   3'- -CUG-GCUGGa-----GCCUcaCC-UgCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.