miRNA display CGI


Results 1 - 20 of 168 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 95094 0.69 0.70202
Target:  5'- aGACCGGCgUCGGGcccggGGACgcggguGGGGCUCg -3'
miRNA:   3'- -CUGGCUGgAGCCUca---CCUG------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 35236 0.7 0.635603
Target:  5'- gGACCGcCCgaUCGGAGaagaGGACGGGcagguCCCc -3'
miRNA:   3'- -CUGGCuGG--AGCCUCa---CCUGCCCu----GGG- -5'
8947 3' -60 NC_002512.2 + 35960 0.7 0.654693
Target:  5'- -cCCGGCCgucagCGGAGUccgGGACGcGAUCCg -3'
miRNA:   3'- cuGGCUGGa----GCCUCA---CCUGCcCUGGG- -5'
8947 3' -60 NC_002512.2 + 76603 0.7 0.654693
Target:  5'- gGACCGACCcagCGGAGccagccGACcaGGACCCg -3'
miRNA:   3'- -CUGGCUGGa--GCCUCac----CUGc-CCUGGG- -5'
8947 3' -60 NC_002512.2 + 135802 0.7 0.654693
Target:  5'- gGACCGGCCgccgccgucgCGGGG-GGAggaGGGuCCCg -3'
miRNA:   3'- -CUGGCUGGa---------GCCUCaCCUg--CCCuGGG- -5'
8947 3' -60 NC_002512.2 + 139387 0.7 0.66612
Target:  5'- cGCCGGCCUCGGccccgaucccgucgaGGACgccccggugaucgGGGACCCg -3'
miRNA:   3'- cUGGCUGGAGCCuca------------CCUG-------------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 3779 0.7 0.683192
Target:  5'- aGACgGACC-CGGAGUcGGACcGGAgcaguCCCg -3'
miRNA:   3'- -CUGgCUGGaGCCUCA-CCUGcCCU-----GGG- -5'
8947 3' -60 NC_002512.2 + 123934 0.7 0.683192
Target:  5'- gGGCUGGCCgUCaGAcucGUGccGGCGGGACCCu -3'
miRNA:   3'- -CUGGCUGG-AGcCU---CAC--CUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 97742 0.69 0.691687
Target:  5'- cACCGACCUCGaGGUGG-CGGucgucuugcucgcGGCCUa -3'
miRNA:   3'- cUGGCUGGAGCcUCACCuGCC-------------CUGGG- -5'
8947 3' -60 NC_002512.2 + 118112 0.71 0.616503
Target:  5'- gGACCGGCCguaucgcugaCGGGGgaggGGGCGGGGgCg -3'
miRNA:   3'- -CUGGCUGGa---------GCCUCa---CCUGCCCUgGg -5'
8947 3' -60 NC_002512.2 + 123133 0.71 0.597445
Target:  5'- cGGCCGuCC-CGGGGgacgGGGCGGcGGCgCCg -3'
miRNA:   3'- -CUGGCuGGaGCCUCa---CCUGCC-CUG-GG- -5'
8947 3' -60 NC_002512.2 + 15076 0.71 0.597445
Target:  5'- --gCGACuCUCGGAGacGGACcuccgcgaccagGGGACCCg -3'
miRNA:   3'- cugGCUG-GAGCCUCa-CCUG------------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 86220 0.77 0.313644
Target:  5'- -cCCGGCUUCGGGGagggGGACGaggaGGACCCg -3'
miRNA:   3'- cuGGCUGGAGCCUCa---CCUGC----CCUGGG- -5'
8947 3' -60 NC_002512.2 + 70693 0.75 0.370764
Target:  5'- gGACCGGCCgggCGGGGgacggggggacggggGGACGGGgggacgggagcgcGCCCg -3'
miRNA:   3'- -CUGGCUGGa--GCCUCa--------------CCUGCCC-------------UGGG- -5'
8947 3' -60 NC_002512.2 + 6839 0.74 0.44047
Target:  5'- cGACCaggggcaccucccgGACCUcgcCGGAGUGGGCGacGACCCg -3'
miRNA:   3'- -CUGG--------------CUGGA---GCCUCACCUGCc-CUGGG- -5'
8947 3' -60 NC_002512.2 + 102111 0.74 0.451514
Target:  5'- uGugCGGCCUCGGccGUcGGAgGGGgACCCu -3'
miRNA:   3'- -CugGCUGGAGCCu-CA-CCUgCCC-UGGG- -5'
8947 3' -60 NC_002512.2 + 130131 0.74 0.451514
Target:  5'- ---aGGCC-CGGGGUGGugucgcggccGCGGGGCCCg -3'
miRNA:   3'- cuggCUGGaGCCUCACC----------UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 52529 0.72 0.522529
Target:  5'- cGAUCGACCUaagGGGGacGGCGGuGACCCu -3'
miRNA:   3'- -CUGGCUGGAg--CCUCacCUGCC-CUGGG- -5'
8947 3' -60 NC_002512.2 + 2290 0.72 0.550284
Target:  5'- -uCCGGCCgcugCGG-GUGG-CGGGGCUCu -3'
miRNA:   3'- cuGGCUGGa---GCCuCACCuGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 2794 0.71 0.578475
Target:  5'- -cCCGACC-CGGccGGcGGccgGCGGGACCCg -3'
miRNA:   3'- cuGGCUGGaGCC--UCaCC---UGCCCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.