miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 225412 0.66 0.882761
Target:  5'- cGCCGGggUCGGGGUcgGGuuGGGGCCg -3'
miRNA:   3'- cUGGCUggAGCCUCA--CCugCCCUGGg -5'
8947 3' -60 NC_002512.2 + 94049 0.66 0.862331
Target:  5'- uGACggCGACCg-GGAagGGcGCGGGACCCu -3'
miRNA:   3'- -CUG--GCUGGagCCUcaCC-UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 112897 0.66 0.855153
Target:  5'- cGugCGGCCgUCGGcccgcccGGACGGGgcgucggcgGCCCg -3'
miRNA:   3'- -CugGCUGG-AGCCuca----CCUGCCC---------UGGG- -5'
8947 3' -60 NC_002512.2 + 221181 1.12 0.001611
Target:  5'- cGACCGACCUCGGAGUGGACGGGACCCg -3'
miRNA:   3'- -CUGGCUGGAGCCUCACCUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 220302 0.66 0.876139
Target:  5'- cGCCGAgCCgcCGGGG-GGcCGGGGgCCg -3'
miRNA:   3'- cUGGCU-GGa-GCCUCaCCuGCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 90654 0.66 0.876139
Target:  5'- cGGCCGcggUCUCGGAGUcGGcggccGCGGcGGCCa -3'
miRNA:   3'- -CUGGCu--GGAGCCUCA-CC-----UGCC-CUGGg -5'
8947 3' -60 NC_002512.2 + 149437 0.66 0.876139
Target:  5'- gGGCgGGCg-CGGGGggagaGGAagGGGACCCg -3'
miRNA:   3'- -CUGgCUGgaGCCUCa----CCUg-CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 100806 0.66 0.869328
Target:  5'- -cCCGuCCUCGGGGUcgaccuGGACGaGGAUg- -3'
miRNA:   3'- cuGGCuGGAGCCUCA------CCUGC-CCUGgg -5'
8947 3' -60 NC_002512.2 + 217595 0.66 0.865152
Target:  5'- cGCCG-CCUCGGGGgucgucggcgacucGGGCGGcGCCa -3'
miRNA:   3'- cUGGCuGGAGCCUCa-------------CCUGCCcUGGg -5'
8947 3' -60 NC_002512.2 + 96526 0.66 0.862331
Target:  5'- aGCCGcGCCggCGGuGUGaGcCGGGGCCg -3'
miRNA:   3'- cUGGC-UGGa-GCCuCAC-CuGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 222993 0.66 0.863039
Target:  5'- -cUCGACCUgcCGGGGagcggcacggcccagGGACGGGucgucGCCCa -3'
miRNA:   3'- cuGGCUGGA--GCCUCa--------------CCUGCCC-----UGGG- -5'
8947 3' -60 NC_002512.2 + 208672 0.66 0.869328
Target:  5'- cGGgCGGCgUccCGGGGgccgcugucccUGGACGGGuACCCg -3'
miRNA:   3'- -CUgGCUGgA--GCCUC-----------ACCUGCCC-UGGG- -5'
8947 3' -60 NC_002512.2 + 201347 0.66 0.882761
Target:  5'- uGGCCGACaUCGGGc--GGCGGcgGACCCg -3'
miRNA:   3'- -CUGGCUGgAGCCUcacCUGCC--CUGGG- -5'
8947 3' -60 NC_002512.2 + 226390 0.66 0.862331
Target:  5'- gGGCCGACgaCGGc---GcCGGGACCCg -3'
miRNA:   3'- -CUGGCUGgaGCCucacCuGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 194267 0.66 0.882761
Target:  5'- cGGCCG-CCgaGGAGUGGAagaUGGcGGCCa -3'
miRNA:   3'- -CUGGCuGGagCCUCACCU---GCC-CUGGg -5'
8947 3' -60 NC_002512.2 + 117097 0.66 0.869328
Target:  5'- gGGCCGcCCUggaccCGGcacAGcGGcACGGGGCCCc -3'
miRNA:   3'- -CUGGCuGGA-----GCC---UCaCC-UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 150560 0.66 0.862331
Target:  5'- --gCGACCUgGGAGgggaggaGGAgCGGGGCgCg -3'
miRNA:   3'- cugGCUGGAgCCUCa------CCU-GCCCUGgG- -5'
8947 3' -60 NC_002512.2 + 185646 0.66 0.862331
Target:  5'- -uCCGACCUCcuGGG-GGACgucgcgGGGAUCCu -3'
miRNA:   3'- cuGGCUGGAGc-CUCaCCUG------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 200335 0.66 0.878811
Target:  5'- cGCCGGCgUccuccugucggcggaCGGGG-GGACGGGGCg- -3'
miRNA:   3'- cUGGCUGgA---------------GCCUCaCCUGCCCUGgg -5'
8947 3' -60 NC_002512.2 + 205314 0.66 0.876139
Target:  5'- cGACgGACCgggagGGAGggaGGAgCGGGAUCUc -3'
miRNA:   3'- -CUGgCUGGag---CCUCa--CCU-GCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.