miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 221181 1.12 0.001611
Target:  5'- cGACCGACCUCGGAGUGGACGGGACCCg -3'
miRNA:   3'- -CUGGCUGGAGCCUCACCUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 212499 0.81 0.166324
Target:  5'- -uCCGACCUCGGGcUGGACGcGGACCa -3'
miRNA:   3'- cuGGCUGGAGCCUcACCUGC-CCUGGg -5'
8947 3' -60 NC_002512.2 + 94574 0.81 0.187085
Target:  5'- cGCCGACCUCGGGGaccgccGGACaggcgaacuGGGGCCCg -3'
miRNA:   3'- cUGGCUGGAGCCUCa-----CCUG---------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 78326 0.79 0.225044
Target:  5'- cGCCGGCuCUCGGgaAGgcgagaccgGGACGGGACCCc -3'
miRNA:   3'- cUGGCUG-GAGCC--UCa--------CCUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 228268 0.79 0.22866
Target:  5'- cGACUGACCgCGGAccgggugggagaggGaGGACGGGACCCg -3'
miRNA:   3'- -CUGGCUGGaGCCU--------------CaCCUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 197869 0.78 0.275348
Target:  5'- aACCGACUgCGGGGcaaGuGACGGGACCCg -3'
miRNA:   3'- cUGGCUGGaGCCUCa--C-CUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 225980 0.77 0.281462
Target:  5'- cGACCGGUCUCGGGGgcaaggGGAcCGGGACgCCg -3'
miRNA:   3'- -CUGGCUGGAGCCUCa-----CCU-GCCCUG-GG- -5'
8947 3' -60 NC_002512.2 + 86220 0.77 0.313644
Target:  5'- -cCCGGCUUCGGGGagggGGACGaggaGGACCCg -3'
miRNA:   3'- cuGGCUGGAGCCUCa---CCUGC----CCUGGG- -5'
8947 3' -60 NC_002512.2 + 219220 0.76 0.363248
Target:  5'- gGGCCGGCCUCGGcGaGGuCGGGAUCg -3'
miRNA:   3'- -CUGGCUGGAGCCuCaCCuGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 70693 0.75 0.370764
Target:  5'- gGACCGGCCgggCGGGGgacggggggacggggGGACGGGgggacgggagcgcGCCCg -3'
miRNA:   3'- -CUGGCUGGa--GCCUCa--------------CCUGCCC-------------UGGG- -5'
8947 3' -60 NC_002512.2 + 208870 0.74 0.417217
Target:  5'- aAUCGGCaCUCGGGG-GGACGGGAggggccgggaaucCCCg -3'
miRNA:   3'- cUGGCUG-GAGCCUCaCCUGCCCU-------------GGG- -5'
8947 3' -60 NC_002512.2 + 6839 0.74 0.44047
Target:  5'- cGACCaggggcaccucccgGACCUcgcCGGAGUGGGCGacGACCCg -3'
miRNA:   3'- -CUGG--------------CUGGA---GCCUCACCUGCc-CUGGG- -5'
8947 3' -60 NC_002512.2 + 130131 0.74 0.451514
Target:  5'- ---aGGCC-CGGGGUGGugucgcggccGCGGGGCCCg -3'
miRNA:   3'- cuggCUGGaGCCUCACC----------UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 102111 0.74 0.451514
Target:  5'- uGugCGGCCUCGGccGUcGGAgGGGgACCCu -3'
miRNA:   3'- -CugGCUGGAGCCu-CA-CCUgCCC-UGGG- -5'
8947 3' -60 NC_002512.2 + 221837 0.73 0.504328
Target:  5'- -uCCGACCcgCGGGGgcgccucgGGAcCGGGACCUc -3'
miRNA:   3'- cuGGCUGGa-GCCUCa-------CCU-GCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 113154 0.73 0.513396
Target:  5'- cGCCGGCCUCGccgcGGccGGGCGGGACgCg -3'
miRNA:   3'- cUGGCUGGAGCc---UCa-CCUGCCCUGgG- -5'
8947 3' -60 NC_002512.2 + 52529 0.72 0.522529
Target:  5'- cGAUCGACCUaagGGGGacGGCGGuGACCCu -3'
miRNA:   3'- -CUGGCUGGAg--CCUCacCUGCC-CUGGG- -5'
8947 3' -60 NC_002512.2 + 190743 0.72 0.522529
Target:  5'- uACUGAUCUCGGAGgccgGGACGcucuucuacguGGACCg -3'
miRNA:   3'- cUGGCUGGAGCCUCa---CCUGC-----------CCUGGg -5'
8947 3' -60 NC_002512.2 + 204720 0.72 0.540977
Target:  5'- cGGCgGGCC-CGGGGcgggGGGCcGGACCCg -3'
miRNA:   3'- -CUGgCUGGaGCCUCa---CCUGcCCUGGG- -5'
8947 3' -60 NC_002512.2 + 2290 0.72 0.550284
Target:  5'- -uCCGGCCgcugCGG-GUGG-CGGGGCUCu -3'
miRNA:   3'- cuGGCUGGa---GCCuCACCuGCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.