miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 228268 0.79 0.22866
Target:  5'- cGACUGACCgCGGAccgggugggagaggGaGGACGGGACCCg -3'
miRNA:   3'- -CUGGCUGGaGCCU--------------CaCCUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 227995 0.7 0.683192
Target:  5'- gGGCCGAgggcCGGAGccGGACGGGACgCg -3'
miRNA:   3'- -CUGGCUgga-GCCUCa-CCUGCCCUGgG- -5'
8947 3' -60 NC_002512.2 + 227962 0.66 0.855153
Target:  5'- gGACCGAaagCGGA-UGGACGGGAg-- -3'
miRNA:   3'- -CUGGCUggaGCCUcACCUGCCCUggg -5'
8947 3' -60 NC_002512.2 + 227482 0.68 0.783346
Target:  5'- cGGCCGGCCgcgaGGAGguagGaGACGccgcGACCCg -3'
miRNA:   3'- -CUGGCUGGag--CCUCa---C-CUGCc---CUGGG- -5'
8947 3' -60 NC_002512.2 + 226594 0.68 0.783346
Target:  5'- gGGCgCGGCC-CGGGGgaggaggGGACGGcGACgCa -3'
miRNA:   3'- -CUG-GCUGGaGCCUCa------CCUGCC-CUGgG- -5'
8947 3' -60 NC_002512.2 + 226454 0.69 0.692628
Target:  5'- cACCGACCagcccCGcGAGgcgGGAggaggcCGGGGCCCg -3'
miRNA:   3'- cUGGCUGGa----GC-CUCa--CCU------GCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 226390 0.66 0.862331
Target:  5'- gGGCCGACgaCGGc---GcCGGGACCCg -3'
miRNA:   3'- -CUGGCUGgaGCCucacCuGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 225980 0.77 0.281462
Target:  5'- cGACCGGUCUCGGGGgcaaggGGAcCGGGACgCCg -3'
miRNA:   3'- -CUGGCUGGAGCCUCa-----CCU-GCCCUG-GG- -5'
8947 3' -60 NC_002512.2 + 225794 0.67 0.815931
Target:  5'- cGCCGGCCgggccgCGGgcggccgGGUGGcCuGGGACCUc -3'
miRNA:   3'- cUGGCUGGa-----GCC-------UCACCuG-CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 225504 0.66 0.865152
Target:  5'- gGGCCG-CCgCGGGGgucccgggcuucgcGGACGGGACg- -3'
miRNA:   3'- -CUGGCuGGaGCCUCa-------------CCUGCCCUGgg -5'
8947 3' -60 NC_002512.2 + 225412 0.66 0.882761
Target:  5'- cGCCGGggUCGGGGUcgGGuuGGGGCCg -3'
miRNA:   3'- cUGGCUggAGCCUCA--CCugCCCUGGg -5'
8947 3' -60 NC_002512.2 + 224113 0.67 0.800308
Target:  5'- cGCCGaACCgUCuGAGcGGACGGGACa- -3'
miRNA:   3'- cUGGC-UGG-AGcCUCaCCUGCCCUGgg -5'
8947 3' -60 NC_002512.2 + 223309 0.68 0.763259
Target:  5'- cGCCGGUCgacaccgugaacggUCGG-GaGGACGGGACCCu -3'
miRNA:   3'- cUGGCUGG--------------AGCCuCaCCUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 223248 0.66 0.854426
Target:  5'- -uUCGAcuCCUCGGGcGUccgcgucgucgggGGGCGGGACgCCg -3'
miRNA:   3'- cuGGCU--GGAGCCU-CA-------------CCUGCCCUG-GG- -5'
8947 3' -60 NC_002512.2 + 223161 0.72 0.572808
Target:  5'- uACCGGCa-CGGAcaguucgucugguacGUGGACGGGccGCCCg -3'
miRNA:   3'- cUGGCUGgaGCCU---------------CACCUGCCC--UGGG- -5'
8947 3' -60 NC_002512.2 + 222993 0.66 0.863039
Target:  5'- -cUCGACCUgcCGGGGagcggcacggcccagGGACGGGucgucGCCCa -3'
miRNA:   3'- cuGGCUGGA--GCCUCa--------------CCUGCCC-----UGGG- -5'
8947 3' -60 NC_002512.2 + 222531 0.67 0.840276
Target:  5'- cGGCCG-CCgUCGcGGUGGgccgggcuACGGcGACCCg -3'
miRNA:   3'- -CUGGCuGG-AGCcUCACC--------UGCC-CUGGG- -5'
8947 3' -60 NC_002512.2 + 222195 0.71 0.629872
Target:  5'- cGGCCGGCgUcguccguuucuucguCGGGGUGGccguCGGGGCCg -3'
miRNA:   3'- -CUGGCUGgA---------------GCCUCACCu---GCCCUGGg -5'
8947 3' -60 NC_002512.2 + 221837 0.73 0.504328
Target:  5'- -uCCGACCcgCGGGGgcgccucgGGAcCGGGACCUc -3'
miRNA:   3'- cuGGCUGGa-GCCUCa-------CCU-GCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 221249 0.69 0.720643
Target:  5'- cGGCCGGCCgcggCGGaAGUcGGgggacGCGGGGCgCg -3'
miRNA:   3'- -CUGGCUGGa---GCC-UCA-CC-----UGCCCUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.