Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8947 | 5' | -56.2 | NC_002512.2 | + | 152749 | 0.67 | 0.925711 |
Target: 5'- cGGaAGGUCCCccGACGGC--GAGGUCu- -3' miRNA: 3'- -UC-UCCAGGGc-UUGCCGaaCUCCAGcu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 133862 | 0.66 | 0.963552 |
Target: 5'- cGAGGacgUCCUgGGGCGGCUcGAGGagCGGc -3' miRNA: 3'- uCUCC---AGGG-CUUGCCGAaCUCCa-GCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 130076 | 0.7 | 0.82717 |
Target: 5'- uGGAcGGUCCCGAAacUGGC-UGAgcguuuuguguccgcGGUCGAg -3' miRNA: 3'- -UCU-CCAGGGCUU--GCCGaACU---------------CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 123394 | 0.71 | 0.780877 |
Target: 5'- cGGGGaguucuUCUCGGACGGCgaGGcGGUCGAg -3' miRNA: 3'- uCUCC------AGGGCUUGCCGaaCU-CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 121936 | 0.67 | 0.920404 |
Target: 5'- cGGcGGUCCCGGacccGCGGCgaUGAuguucgcucacGGUCGGg -3' miRNA: 3'- -UCuCCAGGGCU----UGCCGa-ACU-----------CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 114266 | 0.67 | 0.912601 |
Target: 5'- cGAGGcgagaaUCCuCGAACGGCgcgaucucucgagUGAGGUUGu -3' miRNA: 3'- uCUCC------AGG-GCUUGCCGa------------ACUCCAGCu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 113717 | 0.67 | 0.914875 |
Target: 5'- -uGGGUCCCGAcgcggGCGGCgaucUGcGGGcCGAg -3' miRNA: 3'- ucUCCAGGGCU-----UGCCGa---AC-UCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 112758 | 0.72 | 0.696301 |
Target: 5'- gAGAGccggccGUCCCGGACacgguGGcCUUGAGGUUGAu -3' miRNA: 3'- -UCUC------CAGGGCUUG-----CC-GAACUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 110612 | 0.72 | 0.686542 |
Target: 5'- uAGAaGUCCUGGGCGGCgcagaccaUGGGGUCGc -3' miRNA: 3'- -UCUcCAGGGCUUGCCGa-------ACUCCAGCu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 108449 | 0.67 | 0.930794 |
Target: 5'- gGGGGGUcccucCCCGGGCGGCgccGGGUUc- -3' miRNA: 3'- -UCUCCA-----GGGCUUGCCGaacUCCAGcu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 108389 | 0.68 | 0.890554 |
Target: 5'- cGGGGGgcgagCCCGGugGGUgggGGGGagGAc -3' miRNA: 3'- -UCUCCa----GGGCUugCCGaa-CUCCagCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 105216 | 0.75 | 0.5489 |
Target: 5'- cGAGGUCCCGucUGGCggUGAGGgugaCGAu -3' miRNA: 3'- uCUCCAGGGCuuGCCGa-ACUCCa---GCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 104793 | 0.66 | 0.961567 |
Target: 5'- cGGGGUCCgCGcGCGGCggguuguacuccaGGGcGUCGAa -3' miRNA: 3'- uCUCCAGG-GCuUGCCGaa-----------CUC-CAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 103600 | 0.66 | 0.958095 |
Target: 5'- cGAGGgcggugucgacggccUCCCGGuACcGCUgGAGGUCGGc -3' miRNA: 3'- uCUCC---------------AGGGCU-UGcCGAaCUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 103500 | 0.66 | 0.963552 |
Target: 5'- cGGGGccccgggcgcucUCCCGGGCGGCcaGAGGaccgUGAa -3' miRNA: 3'- uCUCC------------AGGGCUUGCCGaaCUCCa---GCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 103328 | 0.7 | 0.789762 |
Target: 5'- cGAGG-CCCGGGCGGCguagcccGGGG-CGGa -3' miRNA: 3'- uCUCCaGGGCUUGCCGaa-----CUCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 103012 | 0.66 | 0.963552 |
Target: 5'- uGGAGaagccccaGUCCCGGACGGgaaGAGGaCGAc -3' miRNA: 3'- -UCUC--------CAGGGCUUGCCgaaCUCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 102491 | 0.7 | 0.832036 |
Target: 5'- uGGcGGUCCCGcaGGCGGCggacgggGAGGaCGAg -3' miRNA: 3'- -UCuCCAGGGC--UUGCCGaa-----CUCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 96190 | 0.72 | 0.686542 |
Target: 5'- cGGuGGUCCgGGagGCGGCcgcGAGGUCGGc -3' miRNA: 3'- -UCuCCAGGgCU--UGCCGaa-CUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 95258 | 0.75 | 0.539268 |
Target: 5'- cGGAGGgccgcgcggcUCCUGAACGGC--GGGGUCGGg -3' miRNA: 3'- -UCUCC----------AGGGCUUGCCGaaCUCCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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