miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 5' -56.2 NC_002512.2 + 80671 0.68 0.890554
Target:  5'- --cGGUCCCGcGGCGGCggcgacgGGGG-CGAg -3'
miRNA:   3'- ucuCCAGGGC-UUGCCGaa-----CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 80760 0.73 0.676741
Target:  5'- -cGGGUCCCGGggguccucGCGGCUcGAGGagGAg -3'
miRNA:   3'- ucUCCAGGGCU--------UGCCGAaCUCCagCU- -5'
8947 5' -56.2 NC_002512.2 + 81243 0.66 0.952883
Target:  5'- cGGaAGGagUCCG-GCGGCcugcggUUGAGGUCGAc -3'
miRNA:   3'- -UC-UCCa-GGGCuUGCCG------AACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 82418 0.66 0.948904
Target:  5'- cGGuGGUCCC--GCGGCggaGGGGaCGAg -3'
miRNA:   3'- -UCuCCAGGGcuUGCCGaa-CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 84169 0.67 0.940291
Target:  5'- gGGAGGUCCCGGuccagguuCGGCggGAccaGG-CGGc -3'
miRNA:   3'- -UCUCCAGGGCUu-------GCCGaaCU---CCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 87260 0.7 0.832036
Target:  5'- gAGGGGUCuCCGGggagcgaacacGCGGUcgUGGGGUgGAc -3'
miRNA:   3'- -UCUCCAG-GGCU-----------UGCCGa-ACUCCAgCU- -5'
8947 5' -56.2 NC_002512.2 + 89342 0.67 0.925711
Target:  5'- uAGAGGaCCaGAACGGCgucGAGG-CGGc -3'
miRNA:   3'- -UCUCCaGGgCUUGCCGaa-CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 93757 0.68 0.89696
Target:  5'- cGGAGGgCUCGGAgGGagggaggGAGGUCGGg -3'
miRNA:   3'- -UCUCCaGGGCUUgCCgaa----CUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 95258 0.75 0.539268
Target:  5'- cGGAGGgccgcgcggcUCCUGAACGGC--GGGGUCGGg -3'
miRNA:   3'- -UCUCC----------AGGGCUUGCCGaaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 96190 0.72 0.686542
Target:  5'- cGGuGGUCCgGGagGCGGCcgcGAGGUCGGc -3'
miRNA:   3'- -UCuCCAGGgCU--UGCCGaa-CUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 102491 0.7 0.832036
Target:  5'- uGGcGGUCCCGcaGGCGGCggacgggGAGGaCGAg -3'
miRNA:   3'- -UCuCCAGGGC--UUGCCGaa-----CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 103012 0.66 0.963552
Target:  5'- uGGAGaagccccaGUCCCGGACGGgaaGAGGaCGAc -3'
miRNA:   3'- -UCUC--------CAGGGCUUGCCgaaCUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 103328 0.7 0.789762
Target:  5'- cGAGG-CCCGGGCGGCguagcccGGGG-CGGa -3'
miRNA:   3'- uCUCCaGGGCUUGCCGaa-----CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 103500 0.66 0.963552
Target:  5'- cGGGGccccgggcgcucUCCCGGGCGGCcaGAGGaccgUGAa -3'
miRNA:   3'- uCUCC------------AGGGCUUGCCGaaCUCCa---GCU- -5'
8947 5' -56.2 NC_002512.2 + 103600 0.66 0.958095
Target:  5'- cGAGGgcggugucgacggccUCCCGGuACcGCUgGAGGUCGGc -3'
miRNA:   3'- uCUCC---------------AGGGCU-UGcCGAaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 104793 0.66 0.961567
Target:  5'- cGGGGUCCgCGcGCGGCggguuguacuccaGGGcGUCGAa -3'
miRNA:   3'- uCUCCAGG-GCuUGCCGaa-----------CUC-CAGCU- -5'
8947 5' -56.2 NC_002512.2 + 105216 0.75 0.5489
Target:  5'- cGAGGUCCCGucUGGCggUGAGGgugaCGAu -3'
miRNA:   3'- uCUCCAGGGCuuGCCGa-ACUCCa---GCU- -5'
8947 5' -56.2 NC_002512.2 + 108389 0.68 0.890554
Target:  5'- cGGGGGgcgagCCCGGugGGUgggGGGGagGAc -3'
miRNA:   3'- -UCUCCa----GGGCUugCCGaa-CUCCagCU- -5'
8947 5' -56.2 NC_002512.2 + 108449 0.67 0.930794
Target:  5'- gGGGGGUcccucCCCGGGCGGCgccGGGUUc- -3'
miRNA:   3'- -UCUCCA-----GGGCUUGCCGaacUCCAGcu -5'
8947 5' -56.2 NC_002512.2 + 110612 0.72 0.686542
Target:  5'- uAGAaGUCCUGGGCGGCgcagaccaUGGGGUCGc -3'
miRNA:   3'- -UCUcCAGGGCUUGCCGa-------ACUCCAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.