miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 5' -56.2 NC_002512.2 + 199 0.69 0.84001
Target:  5'- aAGGGG-CCCGGGCGGa--GAGGgagCGGg -3'
miRNA:   3'- -UCUCCaGGGCUUGCCgaaCUCCa--GCU- -5'
8947 5' -56.2 NC_002512.2 + 4444 0.68 0.890554
Target:  5'- cGGGGUgCCGGGCGcg--GGGGUCGGc -3'
miRNA:   3'- uCUCCAgGGCUUGCcgaaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 5518 0.68 0.890554
Target:  5'- cGAGGUCCCGGACc----GAGGUCu- -3'
miRNA:   3'- uCUCCAGGGCUUGccgaaCUCCAGcu -5'
8947 5' -56.2 NC_002512.2 + 8036 0.72 0.715659
Target:  5'- gAGAGGUCCCGGucccgaGGCgcccccgcGGGUCGGa -3'
miRNA:   3'- -UCUCCAGGGCUug----CCGaac-----UCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 14353 0.67 0.940291
Target:  5'- cAGcAGGaucUCCCGGAgGGCgggaucGAGGUUGGg -3'
miRNA:   3'- -UC-UCC---AGGGCUUgCCGaa----CUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 16882 0.74 0.627379
Target:  5'- gAGAGGgccccgggCCCGAcggccGCGGCgacgaUGAGGUCGc -3'
miRNA:   3'- -UCUCCa-------GGGCU-----UGCCGa----ACUCCAGCu -5'
8947 5' -56.2 NC_002512.2 + 25908 0.69 0.855421
Target:  5'- --cGGUCCgGAucCGGUccaUGAGGUCGAu -3'
miRNA:   3'- ucuCCAGGgCUu-GCCGa--ACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 31645 0.7 0.789762
Target:  5'- uGGAGGccgUCCCGGACGGCgc-GGGcgCGGc -3'
miRNA:   3'- -UCUCC---AGGGCUUGCCGaacUCCa-GCU- -5'
8947 5' -56.2 NC_002512.2 + 32081 0.7 0.798513
Target:  5'- gGGGGGUCgCCGAugGCGGCccgggUGuccucgcGGUCGAg -3'
miRNA:   3'- -UCUCCAG-GGCU--UGCCGa----ACu------CCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 32693 0.7 0.798513
Target:  5'- uAGAcGGcCCCGAGCGGgUccaUGAGGaCGAa -3'
miRNA:   3'- -UCU-CCaGGGCUUGCCgA---ACUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 39865 0.7 0.823893
Target:  5'- cAGAGGaucaugucggCCuCGAccGCGGCcaacUUGAGGUCGAc -3'
miRNA:   3'- -UCUCCa---------GG-GCU--UGCCG----AACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 40309 0.66 0.960203
Target:  5'- cGAGGaCCCG-GCGGCcc--GGUCGGa -3'
miRNA:   3'- uCUCCaGGGCuUGCCGaacuCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 45102 0.66 0.944707
Target:  5'- cGGAGG-CCCGGGCcacgucCUcGGGGUCGAc -3'
miRNA:   3'- -UCUCCaGGGCUUGcc----GAaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 45189 0.66 0.952883
Target:  5'- cGGAGGUCUCGAccgggaccgGCGGCgcgGAcGGcCGc -3'
miRNA:   3'- -UCUCCAGGGCU---------UGCCGaa-CU-CCaGCu -5'
8947 5' -56.2 NC_002512.2 + 47812 0.66 0.948904
Target:  5'- cAGAc--CCCGGagccGCGGC-UGAGGUCGGc -3'
miRNA:   3'- -UCUccaGGGCU----UGCCGaACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 56360 0.71 0.766407
Target:  5'- cAGAcGGcCCCGAcggacggaucggcggACGGCggggcGAGGUCGAg -3'
miRNA:   3'- -UCU-CCaGGGCU---------------UGCCGaa---CUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 57613 0.67 0.940291
Target:  5'- cAGAuGUCCCGGGCgaccgagcgGGCgUGAGG-CGAg -3'
miRNA:   3'- -UCUcCAGGGCUUG---------CCGaACUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 59488 0.67 0.925711
Target:  5'- -cGGGUCUCGAGCGGCcUGGaugcuGGaCGAa -3'
miRNA:   3'- ucUCCAGGGCUUGCCGaACU-----CCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 65446 0.66 0.963552
Target:  5'- cGAGGgCgCCGAGCGGCUUcccGG-CGAc -3'
miRNA:   3'- uCUCCaG-GGCUUGCCGAAcu-CCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 74402 0.67 0.925711
Target:  5'- uGGGGGU-CCGGACGGUgccGAcgaacucgcGGUCGAc -3'
miRNA:   3'- -UCUCCAgGGCUUGCCGaa-CU---------CCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.