Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8947 | 5' | -56.2 | NC_002512.2 | + | 112758 | 0.72 | 0.696301 |
Target: 5'- gAGAGccggccGUCCCGGACacgguGGcCUUGAGGUUGAu -3' miRNA: 3'- -UCUC------CAGGGCUUG-----CC-GAACUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 113717 | 0.67 | 0.914875 |
Target: 5'- -uGGGUCCCGAcgcggGCGGCgaucUGcGGGcCGAg -3' miRNA: 3'- ucUCCAGGGCU-----UGCCGa---AC-UCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 114266 | 0.67 | 0.912601 |
Target: 5'- cGAGGcgagaaUCCuCGAACGGCgcgaucucucgagUGAGGUUGu -3' miRNA: 3'- uCUCC------AGG-GCUUGCCGa------------ACUCCAGCu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 121936 | 0.67 | 0.920404 |
Target: 5'- cGGcGGUCCCGGacccGCGGCgaUGAuguucgcucacGGUCGGg -3' miRNA: 3'- -UCuCCAGGGCU----UGCCGa-ACU-----------CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 123394 | 0.71 | 0.780877 |
Target: 5'- cGGGGaguucuUCUCGGACGGCgaGGcGGUCGAg -3' miRNA: 3'- uCUCC------AGGGCUUGCCGaaCU-CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 130076 | 0.7 | 0.82717 |
Target: 5'- uGGAcGGUCCCGAAacUGGC-UGAgcguuuuguguccgcGGUCGAg -3' miRNA: 3'- -UCU-CCAGGGCUU--GCCGaACU---------------CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 133862 | 0.66 | 0.963552 |
Target: 5'- cGAGGacgUCCUgGGGCGGCUcGAGGagCGGc -3' miRNA: 3'- uCUCC---AGGG-CUUGCCGAaCUCCa-GCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 152749 | 0.67 | 0.925711 |
Target: 5'- cGGaAGGUCCCccGACGGC--GAGGUCu- -3' miRNA: 3'- -UC-UCCAGGGc-UUGCCGaaCUCCAGcu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 152802 | 0.68 | 0.890554 |
Target: 5'- cGGAGGUCCgCGGcgACGGCggGcGG-CGAg -3' miRNA: 3'- -UCUCCAGG-GCU--UGCCGaaCuCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 153273 | 0.68 | 0.909123 |
Target: 5'- -cGGGUCCUGGuCGGCUggcuccgcuGGGUCGGu -3' miRNA: 3'- ucUCCAGGGCUuGCCGAac-------UCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 163001 | 0.69 | 0.877109 |
Target: 5'- cGGAuGGcguUCCuCGAGCGGCccGAGGUCa- -3' miRNA: 3'- -UCU-CC---AGG-GCUUGCCGaaCUCCAGcu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 168124 | 0.69 | 0.855421 |
Target: 5'- gAGAGGggCCCGGccGCGGCgaggggcugGGGGUgGGg -3' miRNA: 3'- -UCUCCa-GGGCU--UGCCGaa-------CUCCAgCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 186245 | 0.74 | 0.617487 |
Target: 5'- cGAGGUCCCGGuccuCGGUcacGAGGUCu- -3' miRNA: 3'- uCUCCAGGGCUu---GCCGaa-CUCCAGcu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 188923 | 0.67 | 0.940291 |
Target: 5'- cGGAGaGUCCCGGuggcGgGGCgcgGcGGUCGGu -3' miRNA: 3'- -UCUC-CAGGGCU----UgCCGaa-CuCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 195010 | 0.66 | 0.963552 |
Target: 5'- cGGcGGUCCCGGcgGCGGCgacGAcGG-CGAc -3' miRNA: 3'- -UCuCCAGGGCU--UGCCGaa-CU-CCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 195207 | 0.66 | 0.952883 |
Target: 5'- -uGGGUgCCGGugucugagggACGGCcgGAGGUUGAc -3' miRNA: 3'- ucUCCAgGGCU----------UGCCGaaCUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 199178 | 0.71 | 0.744176 |
Target: 5'- -cAGGUCCUcGACGGCcuccaUGAGGUCGu -3' miRNA: 3'- ucUCCAGGGcUUGCCGa----ACUCCAGCu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 204805 | 0.67 | 0.935654 |
Target: 5'- gGGAGGUCCgCGucccgggggcgcGGCGGCUccguccggGAGGaCGAc -3' miRNA: 3'- -UCUCCAGG-GC------------UUGCCGAa-------CUCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 204888 | 0.67 | 0.935654 |
Target: 5'- cGAGcUCUCGGACGGCgagcgGuccuGGUCGGg -3' miRNA: 3'- uCUCcAGGGCUUGCCGaa---Cu---CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 211780 | 0.69 | 0.847807 |
Target: 5'- uGGAGG-CCCGggUGGCcgcgGGGGcCGu -3' miRNA: 3'- -UCUCCaGGGCuuGCCGaa--CUCCaGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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