Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8947 | 5' | -56.2 | NC_002512.2 | + | 110612 | 0.72 | 0.686542 |
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Target: 5'- uAGAaGUCCUGGGCGGCgcagaccaUGGGGUCGc -3' miRNA: 3'- -UCUcCAGGGCUUGCCGa-------ACUCCAGCu -5' |
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| 8947 | 5' | -56.2 | NC_002512.2 | + | 80760 | 0.73 | 0.676741 |
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Target: 5'- -cGGGUCCCGGggguccucGCGGCUcGAGGagGAg -3' miRNA: 3'- ucUCCAGGGCU--------UGCCGAaCUCCagCU- -5' |
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| 8947 | 5' | -56.2 | NC_002512.2 | + | 16882 | 0.74 | 0.627379 |
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Target: 5'- gAGAGGgccccgggCCCGAcggccGCGGCgacgaUGAGGUCGc -3' miRNA: 3'- -UCUCCa-------GGGCU-----UGCCGa----ACUCCAGCu -5' |
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| 8947 | 5' | -56.2 | NC_002512.2 | + | 186245 | 0.74 | 0.617487 |
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Target: 5'- cGAGGUCCCGGuccuCGGUcacGAGGUCu- -3' miRNA: 3'- uCUCCAGGGCUu---GCCGaa-CUCCAGcu -5' |
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| 8947 | 5' | -56.2 | NC_002512.2 | + | 105216 | 0.75 | 0.5489 |
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Target: 5'- cGAGGUCCCGucUGGCggUGAGGgugaCGAu -3' miRNA: 3'- uCUCCAGGGCuuGCCGa-ACUCCa---GCU- -5' |
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| 8947 | 5' | -56.2 | NC_002512.2 | + | 95258 | 0.75 | 0.539268 |
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Target: 5'- cGGAGGgccgcgcggcUCCUGAACGGC--GGGGUCGGg -3' miRNA: 3'- -UCUCC----------AGGGCUUGCCGaaCUCCAGCU- -5' |
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| 8947 | 5' | -56.2 | NC_002512.2 | + | 223923 | 0.79 | 0.348722 |
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Target: 5'- gAGAGGUCgagCCGGACGGg--GAGGUCGAu -3' miRNA: 3'- -UCUCCAG---GGCUUGCCgaaCUCCAGCU- -5' |
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| 8947 | 5' | -56.2 | NC_002512.2 | + | 221221 | 1.09 | 0.004791 |
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Target: 5'- gAGAGGUCCCGAACGGCUUGAGGUCGAu -3' miRNA: 3'- -UCUCCAGGGCUUGCCGAACUCCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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