miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 5' -56.2 NC_002512.2 + 25908 0.69 0.855421
Target:  5'- --cGGUCCgGAucCGGUccaUGAGGUCGAu -3'
miRNA:   3'- ucuCCAGGgCUu-GCCGa--ACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 211780 0.69 0.847807
Target:  5'- uGGAGG-CCCGggUGGCcgcgGGGGcCGu -3'
miRNA:   3'- -UCUCCaGGGCuuGCCGaa--CUCCaGCu -5'
8947 5' -56.2 NC_002512.2 + 229602 0.69 0.84001
Target:  5'- aAGGGG-CCCGGGCGGa--GAGGgagCGGg -3'
miRNA:   3'- -UCUCCaGGGCUUGCCgaaCUCCa--GCU- -5'
8947 5' -56.2 NC_002512.2 + 220208 0.69 0.84001
Target:  5'- cGGGG-CCCGAcgGCGGCccgGGGGaCGAg -3'
miRNA:   3'- uCUCCaGGGCU--UGCCGaa-CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 199 0.69 0.84001
Target:  5'- aAGGGG-CCCGGGCGGa--GAGGgagCGGg -3'
miRNA:   3'- -UCUCCaGGGCUUGCCgaaCUCCa--GCU- -5'
8947 5' -56.2 NC_002512.2 + 102491 0.7 0.832036
Target:  5'- uGGcGGUCCCGcaGGCGGCggacgggGAGGaCGAg -3'
miRNA:   3'- -UCuCCAGGGC--UUGCCGaa-----CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 87260 0.7 0.832036
Target:  5'- gAGGGGUCuCCGGggagcgaacacGCGGUcgUGGGGUgGAc -3'
miRNA:   3'- -UCUCCAG-GGCU-----------UGCCGa-ACUCCAgCU- -5'
8947 5' -56.2 NC_002512.2 + 130076 0.7 0.82717
Target:  5'- uGGAcGGUCCCGAAacUGGC-UGAgcguuuuguguccgcGGUCGAg -3'
miRNA:   3'- -UCU-CCAGGGCUU--GCCGaACU---------------CCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 39865 0.7 0.823893
Target:  5'- cAGAGGaucaugucggCCuCGAccGCGGCcaacUUGAGGUCGAc -3'
miRNA:   3'- -UCUCCa---------GG-GCU--UGCCG----AACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 32693 0.7 0.798513
Target:  5'- uAGAcGGcCCCGAGCGGgUccaUGAGGaCGAa -3'
miRNA:   3'- -UCU-CCaGGGCUUGCCgA---ACUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 32081 0.7 0.798513
Target:  5'- gGGGGGUCgCCGAugGCGGCccgggUGuccucgcGGUCGAg -3'
miRNA:   3'- -UCUCCAG-GGCU--UGCCGa----ACu------CCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 31645 0.7 0.789762
Target:  5'- uGGAGGccgUCCCGGACGGCgc-GGGcgCGGc -3'
miRNA:   3'- -UCUCC---AGGGCUUGCCGaacUCCa-GCU- -5'
8947 5' -56.2 NC_002512.2 + 103328 0.7 0.789762
Target:  5'- cGAGG-CCCGGGCGGCguagcccGGGG-CGGa -3'
miRNA:   3'- uCUCCaGGGCUUGCCGaa-----CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 123394 0.71 0.780877
Target:  5'- cGGGGaguucuUCUCGGACGGCgaGGcGGUCGAg -3'
miRNA:   3'- uCUCC------AGGGCUUGCCGaaCU-CCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 56360 0.71 0.766407
Target:  5'- cAGAcGGcCCCGAcggacggaucggcggACGGCggggcGAGGUCGAg -3'
miRNA:   3'- -UCU-CCaGGGCU---------------UGCCGaa---CUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 199178 0.71 0.744176
Target:  5'- -cAGGUCCUcGACGGCcuccaUGAGGUCGu -3'
miRNA:   3'- ucUCCAGGGcUUGCCGa----ACUCCAGCu -5'
8947 5' -56.2 NC_002512.2 + 225513 0.72 0.722375
Target:  5'- cGGGGGUCCCGGgcuucgcggacgggACGGCgggagcgcgGAGGaCGAc -3'
miRNA:   3'- -UCUCCAGGGCU--------------UGCCGaa-------CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 8036 0.72 0.715659
Target:  5'- gAGAGGUCCCGGucccgaGGCgcccccgcGGGUCGGa -3'
miRNA:   3'- -UCUCCAGGGCUug----CCGaac-----UCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 112758 0.72 0.696301
Target:  5'- gAGAGccggccGUCCCGGACacgguGGcCUUGAGGUUGAu -3'
miRNA:   3'- -UCUC------CAGGGCUUG-----CC-GAACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 110612 0.72 0.686542
Target:  5'- uAGAaGUCCUGGGCGGCgcagaccaUGGGGUCGc -3'
miRNA:   3'- -UCUcCAGGGCUUGCCGa-------ACUCCAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.