miRNA display CGI


Results 61 - 80 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 44544 0.67 0.619623
Target:  5'- -gCGAUGGcGGcgGCCaCCCGGgCGGCGAc -3'
miRNA:   3'- ugGUUGCC-CCa-CGGcGGGCC-GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 149001 0.67 0.619623
Target:  5'- cACCGGcCGGGGgGCCGCCgCGGaCcGCc- -3'
miRNA:   3'- -UGGUU-GCCCCaCGGCGG-GCC-GuCGcu -5'
8948 5' -63.9 NC_002512.2 + 154069 0.67 0.619623
Target:  5'- cGCCAAUGGGGUauccuugacuCCGCCCcuGCAGUa- -3'
miRNA:   3'- -UGGUUGCCCCAc---------GGCGGGc-CGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 32073 0.67 0.619623
Target:  5'- uCCGGCaGGGGggGUCGCCgaUGGCGGCc- -3'
miRNA:   3'- uGGUUG-CCCCa-CGGCGG--GCCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 94669 0.67 0.610159
Target:  5'- cCCGGggcCGGGGgGCCcCCCGGCccgcuGGCGGa -3'
miRNA:   3'- uGGUU---GCCCCaCGGcGGGCCG-----UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 212421 0.67 0.610159
Target:  5'- gACgGGCGGGaGgucgaguucggGCCGgCCGGCcGCGAc -3'
miRNA:   3'- -UGgUUGCCC-Ca----------CGGCgGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 191330 0.67 0.610159
Target:  5'- --gGACGcGGGUGCCGUCCGcGaCGGgGGu -3'
miRNA:   3'- uggUUGC-CCCACGGCGGGC-C-GUCgCU- -5'
8948 5' -63.9 NC_002512.2 + 167734 0.67 0.610159
Target:  5'- uCgAGCGGGGcgaggaGCUGCCgGGCgucGGCGAc -3'
miRNA:   3'- uGgUUGCCCCa-----CGGCGGgCCG---UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 134688 0.67 0.610159
Target:  5'- cACCAGCGGGc-GCuCGCCgGGCuGCc- -3'
miRNA:   3'- -UGGUUGCCCcaCG-GCGGgCCGuCGcu -5'
8948 5' -63.9 NC_002512.2 + 45900 0.67 0.600709
Target:  5'- -aCGACGGGGgcUGuCCGCCCcGacaGGCGAc -3'
miRNA:   3'- ugGUUGCCCC--AC-GGCGGGcCg--UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 152709 0.67 0.600709
Target:  5'- cCCGGuCGGGGUGCgG-CgGGCAGgGGa -3'
miRNA:   3'- uGGUU-GCCCCACGgCgGgCCGUCgCU- -5'
8948 5' -63.9 NC_002512.2 + 193245 0.67 0.600709
Target:  5'- uGCCGACGGcGGUucuacgccuGCgCGCCCuGCcucGGCGAc -3'
miRNA:   3'- -UGGUUGCC-CCA---------CG-GCGGGcCG---UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 161999 0.67 0.600709
Target:  5'- gACCugguGCGGGaugcgGaCCGCCUGGCcgacGGCGAg -3'
miRNA:   3'- -UGGu---UGCCCca---C-GGCGGGCCG----UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 40679 0.67 0.600709
Target:  5'- uCCGACGucGagcaUGCCGCCCG-CGGCGAc -3'
miRNA:   3'- uGGUUGCccC----ACGGCGGGCcGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 182453 0.67 0.591279
Target:  5'- cGCCGuGCGGGcGUGgUGCUCguGGCAGUGGa -3'
miRNA:   3'- -UGGU-UGCCC-CACgGCGGG--CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 21454 0.67 0.591279
Target:  5'- cUCGAuCGGGG-GCCgGCgCCGGgAGCGGc -3'
miRNA:   3'- uGGUU-GCCCCaCGG-CG-GGCCgUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 71012 0.67 0.591279
Target:  5'- --gGACGGGGgGCCGCCgcCGGcCGGuCGAc -3'
miRNA:   3'- uggUUGCCCCaCGGCGG--GCC-GUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 98536 0.67 0.591279
Target:  5'- cGCCGGCuGGGaccUCGCCCGGCGuuccGCGGa -3'
miRNA:   3'- -UGGUUGcCCCac-GGCGGGCCGU----CGCU- -5'
8948 5' -63.9 NC_002512.2 + 134752 0.67 0.591279
Target:  5'- cCCGcCGGGGcgGaCCGUCCGGUucgucGGCGGg -3'
miRNA:   3'- uGGUuGCCCCa-C-GGCGGGCCG-----UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 219835 0.67 0.591279
Target:  5'- gUCGGuCGGGGgGuCCgGCCCGGgGGCGGa -3'
miRNA:   3'- uGGUU-GCCCCaC-GG-CGGGCCgUCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.