miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 2064 0.66 0.64804
Target:  5'- cGCCAGCGGGaGcGCggaguccaCGCCgGGCgggAGCGGg -3'
miRNA:   3'- -UGGUUGCCC-CaCG--------GCGGgCCG---UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 116542 0.66 0.64804
Target:  5'- uGCCAGCugcuGGGGaugaacgGCCGCCUGuGCGaCGAg -3'
miRNA:   3'- -UGGUUG----CCCCa------CGGCGGGC-CGUcGCU- -5'
8948 5' -63.9 NC_002512.2 + 193888 0.66 0.64804
Target:  5'- -aCGACGcGGGagcggGUCGCCgCGGuCGGCGGa -3'
miRNA:   3'- ugGUUGC-CCCa----CGGCGG-GCC-GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 64351 0.66 0.64804
Target:  5'- aGCUcgauGACGGcGGUGCUggucuGCCCGuuGCAGCGc -3'
miRNA:   3'- -UGG----UUGCC-CCACGG-----CGGGC--CGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 158851 0.66 0.6452
Target:  5'- --gAGCGGGGggacgucgucgucgaCCGgCCGGCGGCGGc -3'
miRNA:   3'- uggUUGCCCCac-------------GGCgGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 173326 0.66 0.63857
Target:  5'- cGCCuGCGGGGUcuuCgGuCCCGGCAcGCGc -3'
miRNA:   3'- -UGGuUGCCCCAc--GgC-GGGCCGU-CGCu -5'
8948 5' -63.9 NC_002512.2 + 113226 0.66 0.63857
Target:  5'- cGCCcggggaGACGGGcacgGCagcaggaGCCuCGGCAGCGAg -3'
miRNA:   3'- -UGG------UUGCCCca--CGg------CGG-GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 15661 0.66 0.63857
Target:  5'- aGCCGACGa---GCCGCCUgacgucccggGGCAGCGGg -3'
miRNA:   3'- -UGGUUGCcccaCGGCGGG----------CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 135209 0.66 0.63857
Target:  5'- cGCCAGCGGGccgggggGCCcCCCGGCccCGGg -3'
miRNA:   3'- -UGGUUGCCCca-----CGGcGGGCCGucGCU- -5'
8948 5' -63.9 NC_002512.2 + 70725 0.66 0.63857
Target:  5'- --gGACGGGGggacgggaGCgCGCCCGGCcgccucacuuggAGCGGc -3'
miRNA:   3'- uggUUGCCCCa-------CG-GCGGGCCG------------UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 114779 0.66 0.637623
Target:  5'- -gCGACGGGGcacgGCgucccgaCGuCCCGGCAGaCGAc -3'
miRNA:   3'- ugGUUGCCCCa---CG-------GC-GGGCCGUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 92207 0.66 0.636676
Target:  5'- gGCCGcuaugACGGGGaucaccgauaugGCCGCCCGGUgaccGGUa- -3'
miRNA:   3'- -UGGU-----UGCCCCa-----------CGGCGGGCCG----UCGcu -5'
8948 5' -63.9 NC_002512.2 + 149490 0.66 0.630043
Target:  5'- cACCAuCGGGGgcggguggucaaaagGCCGCggCCGG-AGCGGg -3'
miRNA:   3'- -UGGUuGCCCCa--------------CGGCG--GGCCgUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 206885 0.66 0.629096
Target:  5'- cGCCGACGGGuaggucaccaGcGCCGCCCGcgucccGCcGCGGg -3'
miRNA:   3'- -UGGUUGCCC----------CaCGGCGGGC------CGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 140914 0.66 0.629096
Target:  5'- -aCGACGGGGacgacgcgGCgGCUCGGgaCGGCGAc -3'
miRNA:   3'- ugGUUGCCCCa-------CGgCGGGCC--GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 106011 0.66 0.629096
Target:  5'- gGCgAACGGGcGgcGCCGCCgGgGguGCGGc -3'
miRNA:   3'- -UGgUUGCCC-Ca-CGGCGGgC-CguCGCU- -5'
8948 5' -63.9 NC_002512.2 + 46995 0.66 0.629096
Target:  5'- cGCCGAgaGGG-GCCGCuucuugCUGGCGGCGGa -3'
miRNA:   3'- -UGGUUgcCCCaCGGCG------GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 6329 0.67 0.623412
Target:  5'- cGCCcGCGGGGggaccgggcgcgggGCCGgCgGGCcGCGGg -3'
miRNA:   3'- -UGGuUGCCCCa-------------CGGCgGgCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 44544 0.67 0.619623
Target:  5'- -gCGAUGGcGGcgGCCaCCCGGgCGGCGAc -3'
miRNA:   3'- ugGUUGCC-CCa-CGGcGGGCC-GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 31712 0.67 0.619623
Target:  5'- cGCCGACGuGGaGguccGCCGgCCGGCGcCGAc -3'
miRNA:   3'- -UGGUUGC-CC-Ca---CGGCgGGCCGUcGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.