Results 41 - 60 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8948 | 5' | -63.9 | NC_002512.2 | + | 140914 | 0.66 | 0.629096 |
Target: 5'- -aCGACGGGGacgacgcgGCgGCUCGGgaCGGCGAc -3' miRNA: 3'- ugGUUGCCCCa-------CGgCGGGCC--GUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 184641 | 0.66 | 0.6575 |
Target: 5'- gGCCGACGGcgaguccgcgGGcGCCGCgccgaaauCCGGuCGGCGGc -3' miRNA: 3'- -UGGUUGCC----------CCaCGGCG--------GGCC-GUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 81955 | 0.66 | 0.666942 |
Target: 5'- gGCCGGCGcGcGGUGa-GCCCcgggcgggugguGGCGGCGGg -3' miRNA: 3'- -UGGUUGC-C-CCACggCGGG------------CCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 83969 | 0.66 | 0.666942 |
Target: 5'- cCCGGCGGcGGa--UGCCCGGC-GCGGg -3' miRNA: 3'- uGGUUGCC-CCacgGCGGGCCGuCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 155371 | 0.66 | 0.666942 |
Target: 5'- cGCuCGAgguCGGGGcgGCgGCgCCGGCGGgCGAu -3' miRNA: 3'- -UG-GUU---GCCCCa-CGgCG-GGCCGUC-GCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 27970 | 0.66 | 0.685746 |
Target: 5'- cGCCGAUGGGcG-GCCGggcgagauUCCGGC-GCGGg -3' miRNA: 3'- -UGGUUGCCC-CaCGGC--------GGGCCGuCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 21076 | 0.66 | 0.685746 |
Target: 5'- cACgGGCGGcGGUcCCGCuCCGG-GGCGAc -3' miRNA: 3'- -UGgUUGCC-CCAcGGCG-GGCCgUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 116707 | 0.66 | 0.684809 |
Target: 5'- aGCgGACGGcgacgccGGUcgcgucCCGCCCGGCcgcGGCGAg -3' miRNA: 3'- -UGgUUGCC-------CCAc-----GGCGGGCCG---UCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 103204 | 0.66 | 0.682933 |
Target: 5'- gGCgAGCGGGGguauccgaggcggcUcgcgucGCCGCCCGucgacggccGCGGCGAg -3' miRNA: 3'- -UGgUUGCCCC--------------A------CGGCGGGC---------CGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 48347 | 0.66 | 0.676359 |
Target: 5'- cAUCGcGCGGGcGUGCgaGCUgcugaaCGGCAGCGAc -3' miRNA: 3'- -UGGU-UGCCC-CACGg-CGG------GCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 137090 | 0.66 | 0.676359 |
Target: 5'- gGCCcGCGGuGUG-CGCCCaGGCGcGCGGg -3' miRNA: 3'- -UGGuUGCCcCACgGCGGG-CCGU-CGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 122270 | 0.66 | 0.676359 |
Target: 5'- gGCC-GCGGGGacguccUGgaGCCCGuCAGCGAg -3' miRNA: 3'- -UGGuUGCCCC------ACggCGGGCcGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 70857 | 0.66 | 0.6575 |
Target: 5'- uGCC-GCGGagaagucgucGGU-CCGCCCGGC-GCGGa -3' miRNA: 3'- -UGGuUGCC----------CCAcGGCGGGCCGuCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 111290 | 0.66 | 0.6575 |
Target: 5'- gGCCGccGCGGGGagaggGCCGCCgaucGCGGCu- -3' miRNA: 3'- -UGGU--UGCCCCa----CGGCGGgc--CGUCGcu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 22073 | 0.66 | 0.665998 |
Target: 5'- cGCCGAguCGGGGUucggagaGCuCGUCCGGCcGgGAg -3' miRNA: 3'- -UGGUU--GCCCCA-------CG-GCGGGCCGuCgCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 12196 | 0.66 | 0.666942 |
Target: 5'- cGCCGGCGGGGaagaGCCagcccaagcGCCCGGaccCGAg -3' miRNA: 3'- -UGGUUGCCCCa---CGG---------CGGGCCgucGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 5208 | 0.66 | 0.676359 |
Target: 5'- gACC-GCGGGccaGCCGa-CGGCGGCGGg -3' miRNA: 3'- -UGGuUGCCCca-CGGCggGCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 32073 | 0.67 | 0.619623 |
Target: 5'- uCCGGCaGGGGggGUCGCCgaUGGCGGCc- -3' miRNA: 3'- uGGUUG-CCCCa-CGGCGG--GCCGUCGcu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 44544 | 0.67 | 0.619623 |
Target: 5'- -gCGAUGGcGGcgGCCaCCCGGgCGGCGAc -3' miRNA: 3'- ugGUUGCC-CCa-CGGcGGGCC-GUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 31712 | 0.67 | 0.619623 |
Target: 5'- cGCCGACGuGGaGguccGCCGgCCGGCGcCGAc -3' miRNA: 3'- -UGGUUGC-CC-Ca---CGGCgGGCCGUcGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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