miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 62332 0.69 0.508164
Target:  5'- aGCCGACGGGcacCC-CCUGGCGGCGc -3'
miRNA:   3'- -UGGUUGCCCcacGGcGGGCCGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 64351 0.66 0.64804
Target:  5'- aGCUcgauGACGGcGGUGCUggucuGCCCGuuGCAGCGc -3'
miRNA:   3'- -UGG----UUGCC-CCACGG-----CGGGC--CGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 68367 0.74 0.234076
Target:  5'- cCCGggcuCGGcGGUGCCGUCCGcGCAGCGc -3'
miRNA:   3'- uGGUu---GCC-CCACGGCGGGC-CGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 70725 0.66 0.63857
Target:  5'- --gGACGGGGggacgggaGCgCGCCCGGCcgccucacuuggAGCGGc -3'
miRNA:   3'- uggUUGCCCCa-------CG-GCGGGCCG------------UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 70857 0.66 0.6575
Target:  5'- uGCC-GCGGagaagucgucGGU-CCGCCCGGC-GCGGa -3'
miRNA:   3'- -UGGuUGCC----------CCAcGGCGGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 71012 0.67 0.591279
Target:  5'- --gGACGGGGgGCCGCCgcCGGcCGGuCGAc -3'
miRNA:   3'- uggUUGCCCCaCGGCGG--GCC-GUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 74783 0.66 0.675419
Target:  5'- uCCAGggUGGGGagucgacUGCUGacgcccgggcaCCCGGCAGCGGc -3'
miRNA:   3'- uGGUU--GCCCC-------ACGGC-----------GGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 75090 0.7 0.422177
Target:  5'- cGCCGuuuCGGGGgcucgacgucGCCGCCUGGCGGaCa- -3'
miRNA:   3'- -UGGUu--GCCCCa---------CGGCGGGCCGUC-Gcu -5'
8948 5' -63.9 NC_002512.2 + 75345 0.68 0.563162
Target:  5'- gACCGagGCGGaGGcgGCgGaCCGGUAGCGAu -3'
miRNA:   3'- -UGGU--UGCC-CCa-CGgCgGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 75564 0.7 0.437855
Target:  5'- cGCCGggGCGGGGccGCCGCCgucgcggucgacgUGGCGGCu- -3'
miRNA:   3'- -UGGU--UGCCCCa-CGGCGG-------------GCCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 76539 0.69 0.471916
Target:  5'- cCCAGCGGGacccGCCGaCCCGGaccggccCAGCGGa -3'
miRNA:   3'- uGGUUGCCCca--CGGC-GGGCC-------GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 76581 0.7 0.421362
Target:  5'- cCCAGCGGGaaccgGCCGaCCCGGaccgaccCAGCGGa -3'
miRNA:   3'- uGGUUGCCCca---CGGC-GGGCC-------GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 80938 0.7 0.422177
Target:  5'- cCCGGCGGuaGGUGCCGuCCCGGgucuGGCGc -3'
miRNA:   3'- uGGUUGCC--CCACGGC-GGGCCg---UCGCu -5'
8948 5' -63.9 NC_002512.2 + 81955 0.66 0.666942
Target:  5'- gGCCGGCGcGcGGUGa-GCCCcgggcgggugguGGCGGCGGg -3'
miRNA:   3'- -UGGUUGC-C-CCACggCGGG------------CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 82026 0.69 0.472785
Target:  5'- cGCCcggguCGGGGU--CGCgCCGGCGGCGGu -3'
miRNA:   3'- -UGGuu---GCCCCAcgGCG-GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 82357 0.69 0.478889
Target:  5'- gGCguGCGGGGgcggcggagggugaUGCUGCggCCGGCGGUGGc -3'
miRNA:   3'- -UGguUGCCCC--------------ACGGCG--GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 83706 0.74 0.267459
Target:  5'- aGCCca-GGGcgaccGUGCCGCgCGGCAGCGGg -3'
miRNA:   3'- -UGGuugCCC-----CACGGCGgGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 83969 0.66 0.666942
Target:  5'- cCCGGCGGcGGa--UGCCCGGC-GCGGg -3'
miRNA:   3'- uGGUUGCC-CCacgGCGGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 84853 0.67 0.581874
Target:  5'- gGCCGuccCGGGcGuUGCgCGCCCGGgcgUAGCGGg -3'
miRNA:   3'- -UGGUu--GCCC-C-ACG-GCGGGCC---GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 86332 0.68 0.517186
Target:  5'- cGCCcGCGGGGagacgcgcgGCCGCCgaCGGCGaCGAg -3'
miRNA:   3'- -UGGuUGCCCCa--------CGGCGG--GCCGUcGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.