miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 31712 0.67 0.619623
Target:  5'- cGCCGACGuGGaGguccGCCGgCCGGCGcCGAc -3'
miRNA:   3'- -UGGUUGC-CC-Ca---CGGCgGGCCGUcGCU- -5'
8948 5' -63.9 NC_002512.2 + 32073 0.67 0.619623
Target:  5'- uCCGGCaGGGGggGUCGCCgaUGGCGGCc- -3'
miRNA:   3'- uGGUUG-CCCCa-CGGCGG--GCCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 33195 0.71 0.390305
Target:  5'- gGCUGGCGGacGGUGCCGCucgucccgCCGGCAGUcaGAg -3'
miRNA:   3'- -UGGUUGCC--CCACGGCG--------GGCCGUCG--CU- -5'
8948 5' -63.9 NC_002512.2 + 40679 0.67 0.600709
Target:  5'- uCCGACGucGagcaUGCCGCCCG-CGGCGAc -3'
miRNA:   3'- uGGUUGCccC----ACGGCGGGCcGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 42930 0.7 0.447083
Target:  5'- gGCCcgggAGCGGGGgaucuCCGCCaGGUAGCGGu -3'
miRNA:   3'- -UGG----UUGCCCCac---GGCGGgCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 44544 0.67 0.619623
Target:  5'- -gCGAUGGcGGcgGCCaCCCGGgCGGCGAc -3'
miRNA:   3'- ugGUUGCC-CCa-CGGcGGGCC-GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 45061 0.69 0.490326
Target:  5'- gUCGAUGGaGGUGUCGCggCCGGC-GCGGa -3'
miRNA:   3'- uGGUUGCC-CCACGGCG--GGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 45419 0.68 0.553866
Target:  5'- cGCuCGACGGcGGcGCCGgCCG-CGGCGAc -3'
miRNA:   3'- -UG-GUUGCC-CCaCGGCgGGCcGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 45459 0.68 0.542771
Target:  5'- cGCCGGCGGcggccgaggcgacGGagaagGCCGagcgcccCCCGGCGGCGGc -3'
miRNA:   3'- -UGGUUGCC-------------CCa----CGGC-------GGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 45900 0.67 0.600709
Target:  5'- -aCGACGGGGgcUGuCCGCCCcGacaGGCGAc -3'
miRNA:   3'- ugGUUGCCCC--AC-GGCGGGcCg--UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 46242 0.7 0.414062
Target:  5'- uCC-ACGGGGggucaGaCCGCCUGGCugAGCGAa -3'
miRNA:   3'- uGGuUGCCCCa----C-GGCGGGCCG--UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 46995 0.66 0.629096
Target:  5'- cGCCGAgaGGG-GCCGCuucuugCUGGCGGCGGa -3'
miRNA:   3'- -UGGUUgcCCCaCGGCG------GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 48347 0.66 0.676359
Target:  5'- cAUCGcGCGGGcGUGCgaGCUgcugaaCGGCAGCGAc -3'
miRNA:   3'- -UGGU-UGCCC-CACGg-CGG------GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 49436 0.66 0.6575
Target:  5'- aGCCGucgagaaaugACGGGc-GCCGCCCGG-GGCGc -3'
miRNA:   3'- -UGGU----------UGCCCcaCGGCGGGCCgUCGCu -5'
8948 5' -63.9 NC_002512.2 + 49665 0.7 0.422177
Target:  5'- cACguACGGGGcGCgGgCCGGCAGCc- -3'
miRNA:   3'- -UGguUGCCCCaCGgCgGGCCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 56257 0.69 0.481517
Target:  5'- gACC--CGGGGUucGCCGCCgCGGCggaGGCGc -3'
miRNA:   3'- -UGGuuGCCCCA--CGGCGG-GCCG---UCGCu -5'
8948 5' -63.9 NC_002512.2 + 57170 0.72 0.345543
Target:  5'- -aCAGCGGGuUGCCGCagggcaccucgCGGCAGCGGu -3'
miRNA:   3'- ugGUUGCCCcACGGCGg----------GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 57354 0.66 0.685746
Target:  5'- gGCCugguugggGACGGGGaUGCCGaagGGCAGgGAg -3'
miRNA:   3'- -UGG--------UUGCCCC-ACGGCgggCCGUCgCU- -5'
8948 5' -63.9 NC_002512.2 + 57851 0.69 0.495648
Target:  5'- cCCGGCGGGuGgggcgcaUGCUGCCggccggaccggcgaCGGCGGCGAc -3'
miRNA:   3'- uGGUUGCCC-C-------ACGGCGG--------------GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 60332 0.69 0.508164
Target:  5'- cGCCGGCGaaGGccacGCCGCCgGGCAGCc- -3'
miRNA:   3'- -UGGUUGCc-CCa---CGGCGGgCCGUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.