miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 207598 0.72 0.345543
Target:  5'- gGCCugcGACGGcGGcgGCUGCUgCGGCGGCGAg -3'
miRNA:   3'- -UGG---UUGCC-CCa-CGGCGG-GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 206885 0.66 0.629096
Target:  5'- cGCCGACGGGuaggucaccaGcGCCGCCCGcgucccGCcGCGGg -3'
miRNA:   3'- -UGGUUGCCC----------CaCGGCGGGC------CGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 205639 0.66 0.6575
Target:  5'- uGCCcGCGGGGgacGCCG-UCGGCGGgccCGAc -3'
miRNA:   3'- -UGGuUGCCCCa--CGGCgGGCCGUC---GCU- -5'
8948 5' -63.9 NC_002512.2 + 205095 0.68 0.544616
Target:  5'- uCCGuccuCGGGGgGCgCGCCCGGacccgAGCGGg -3'
miRNA:   3'- uGGUu---GCCCCaCG-GCGGGCCg----UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 204725 0.71 0.390305
Target:  5'- gGCCcggGGCGGGGgGCCGgaCCCGGguGCu- -3'
miRNA:   3'- -UGG---UUGCCCCaCGGC--GGGCCguCGcu -5'
8948 5' -63.9 NC_002512.2 + 201681 0.68 0.534499
Target:  5'- uUCGGCGaGGGcgGCCGCgucuggugcgggaUCGGCGGCGGc -3'
miRNA:   3'- uGGUUGC-CCCa-CGGCG-------------GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 200714 0.72 0.324584
Target:  5'- -gCGuCGGGcUGCCGCCCGGCGGUccGAa -3'
miRNA:   3'- ugGUuGCCCcACGGCGGGCCGUCG--CU- -5'
8948 5' -63.9 NC_002512.2 + 195055 0.66 0.64804
Target:  5'- gGCCcGCGGGcGggaggGUCGUCCGGuCGGgGAc -3'
miRNA:   3'- -UGGuUGCCC-Ca----CGGCGGGCC-GUCgCU- -5'
8948 5' -63.9 NC_002512.2 + 193888 0.66 0.64804
Target:  5'- -aCGACGcGGGagcggGUCGCCgCGGuCGGCGGa -3'
miRNA:   3'- ugGUUGC-CCCa----CGGCGG-GCC-GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 193245 0.67 0.600709
Target:  5'- uGCCGACGGcGGUucuacgccuGCgCGCCCuGCcucGGCGAc -3'
miRNA:   3'- -UGGUUGCC-CCA---------CG-GCGGGcCG---UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 191330 0.67 0.610159
Target:  5'- --gGACGcGGGUGCCGUCCGcGaCGGgGGu -3'
miRNA:   3'- uggUUGC-CCCACGGCGGGC-C-GUCgCU- -5'
8948 5' -63.9 NC_002512.2 + 188649 0.71 0.367455
Target:  5'- cGCCGGCGGcGGcgGCgGCCCGucguccgaccGCGGCGGu -3'
miRNA:   3'- -UGGUUGCC-CCa-CGgCGGGC----------CGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 188551 0.68 0.563162
Target:  5'- gGCCAACucGG-GCaGCuCCGGCGGCGAc -3'
miRNA:   3'- -UGGUUGccCCaCGgCG-GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 187645 0.69 0.471916
Target:  5'- aGCCAugGaGGGcgGCgGCCacggucacggucaCGGCGGCGGg -3'
miRNA:   3'- -UGGUugC-CCCa-CGgCGG-------------GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 186455 0.68 0.526271
Target:  5'- cACCGACGacgccuccGUGCUGCUCGGcCGGCGGa -3'
miRNA:   3'- -UGGUUGCcc------CACGGCGGGCC-GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 185533 0.66 0.6575
Target:  5'- uUCGAgGGGGUgGCCuaCCGGCcccGCGGc -3'
miRNA:   3'- uGGUUgCCCCA-CGGcgGGCCGu--CGCU- -5'
8948 5' -63.9 NC_002512.2 + 184800 0.68 0.553866
Target:  5'- gGCCuccGCGGGGagacccuuCCGCgCCGGCcGCGAc -3'
miRNA:   3'- -UGGu--UGCCCCac------GGCG-GGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 184641 0.66 0.6575
Target:  5'- gGCCGACGGcgaguccgcgGGcGCCGCgccgaaauCCGGuCGGCGGc -3'
miRNA:   3'- -UGGUUGCC----------CCaCGGCG--------GGCC-GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 183506 0.67 0.581874
Target:  5'- gGCCGcgaGGGGgagGCCguccucGCCUGGCuGCGGa -3'
miRNA:   3'- -UGGUug-CCCCa--CGG------CGGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 182453 0.67 0.591279
Target:  5'- cGCCGuGCGGGcGUGgUGCUCguGGCAGUGGa -3'
miRNA:   3'- -UGGU-UGCCC-CACgGCGGG--CCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.