miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 229562 0.68 0.563162
Target:  5'- cGCCGGCGGaGGaGCgCGCgCCGGgAGgGAc -3'
miRNA:   3'- -UGGUUGCC-CCaCG-GCG-GGCCgUCgCU- -5'
8948 5' -63.9 NC_002512.2 + 227515 0.68 0.535416
Target:  5'- cCCGGgGGGGaGa-GUCCGGCGGCGGa -3'
miRNA:   3'- uGGUUgCCCCaCggCGGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 224620 0.71 0.382586
Target:  5'- gACCGggcuCGGGGUcGCCGCCgCGGCcuCGGc -3'
miRNA:   3'- -UGGUu---GCCCCA-CGGCGG-GCCGucGCU- -5'
8948 5' -63.9 NC_002512.2 + 223200 0.66 0.676359
Target:  5'- cCCGACGGGGacGgCGuCCCGG-AGCGc -3'
miRNA:   3'- uGGUUGCCCCa-CgGC-GGGCCgUCGCu -5'
8948 5' -63.9 NC_002512.2 + 222668 0.66 0.664111
Target:  5'- gGCCGA-GGGGcGCCucgaguucgacugcGCCCGGCA-CGGg -3'
miRNA:   3'- -UGGUUgCCCCaCGG--------------CGGGCCGUcGCU- -5'
8948 5' -63.9 NC_002512.2 + 221033 1.07 0.001163
Target:  5'- cACCAACGGGGUGCCGCCCGGCAGCGAg -3'
miRNA:   3'- -UGGUUGCCCCACGGCGGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 220203 0.67 0.619623
Target:  5'- cCCGcCGGGGcccgacgGCgGCCCGGgGGaCGAg -3'
miRNA:   3'- uGGUuGCCCCa------CGgCGGGCCgUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 219835 0.67 0.591279
Target:  5'- gUCGGuCGGGGgGuCCgGCCCGGgGGCGGa -3'
miRNA:   3'- uGGUU-GCCCCaC-GG-CGGGCCgUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 219318 0.66 0.661279
Target:  5'- gGCC-ACGGGGagagcgucggcgugGCCcgccggcuGCCCGGCGuccGCGAg -3'
miRNA:   3'- -UGGuUGCCCCa-------------CGG--------CGGGCCGU---CGCU- -5'
8948 5' -63.9 NC_002512.2 + 217572 0.66 0.666942
Target:  5'- -gCGACGGcGaGCCgGUCCGGCGGCGc -3'
miRNA:   3'- ugGUUGCCcCaCGG-CGGGCCGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 217106 0.73 0.291787
Target:  5'- -gCAGCGGGGgcGCCGCCgaguccugcggCGGCAGCa- -3'
miRNA:   3'- ugGUUGCCCCa-CGGCGG-----------GCCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 214627 0.66 0.666942
Target:  5'- gACCcucGCGGGGacgcggGCCGCCUcGCAGUc- -3'
miRNA:   3'- -UGGu--UGCCCCa-----CGGCGGGcCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 213743 0.78 0.133874
Target:  5'- gACCGACcGGGcgcagGCCGCCCGGCAGaUGAu -3'
miRNA:   3'- -UGGUUGcCCCa----CGGCGGGCCGUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 213526 0.66 0.666942
Target:  5'- uCCGGguCGGGGUGCC-CUCGG-AGCGu -3'
miRNA:   3'- uGGUU--GCCCCACGGcGGGCCgUCGCu -5'
8948 5' -63.9 NC_002512.2 + 213354 0.71 0.390305
Target:  5'- aGCCAG-GGGGacGcCCGCgCUGGCGGCGAc -3'
miRNA:   3'- -UGGUUgCCCCa-C-GGCG-GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 212421 0.67 0.610159
Target:  5'- gACgGGCGGGaGgucgaguucggGCCGgCCGGCcGCGAc -3'
miRNA:   3'- -UGgUUGCCC-Ca----------CGGCgGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 211793 0.72 0.33845
Target:  5'- gGCC-GCGGGG-GCCGuCCCGccGCGGCGc -3'
miRNA:   3'- -UGGuUGCCCCaCGGC-GGGC--CGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 211718 0.69 0.472785
Target:  5'- cGCCuACGGGGagcugUGCCucgGCCUGGCccGCGAc -3'
miRNA:   3'- -UGGuUGCCCC-----ACGG---CGGGCCGu-CGCU- -5'
8948 5' -63.9 NC_002512.2 + 211496 0.66 0.684809
Target:  5'- uCCAGCaGGagcuccuGUGCCGCCacauCGGCcGCGAu -3'
miRNA:   3'- uGGUUGcCC-------CACGGCGG----GCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 209024 0.73 0.285547
Target:  5'- cGCCAugaGCGGGGcgGCCGCgucCCGG-AGCGAu -3'
miRNA:   3'- -UGGU---UGCCCCa-CGGCG---GGCCgUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.