miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 2064 0.66 0.64804
Target:  5'- cGCCAGCGGGaGcGCggaguccaCGCCgGGCgggAGCGGg -3'
miRNA:   3'- -UGGUUGCCC-CaCG--------GCGGgCCG---UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 140914 0.66 0.629096
Target:  5'- -aCGACGGGGacgacgcgGCgGCUCGGgaCGGCGAc -3'
miRNA:   3'- ugGUUGCCCCa-------CGgCGGGCC--GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 106011 0.66 0.629096
Target:  5'- gGCgAACGGGcGgcGCCGCCgGgGguGCGGc -3'
miRNA:   3'- -UGgUUGCCC-Ca-CGGCGGgC-CguCGCU- -5'
8948 5' -63.9 NC_002512.2 + 22073 0.66 0.665998
Target:  5'- cGCCGAguCGGGGUucggagaGCuCGUCCGGCcGgGAg -3'
miRNA:   3'- -UGGUU--GCCCCA-------CG-GCGGGCCGuCgCU- -5'
8948 5' -63.9 NC_002512.2 + 49436 0.66 0.6575
Target:  5'- aGCCGucgagaaaugACGGGc-GCCGCCCGG-GGCGc -3'
miRNA:   3'- -UGGU----------UGCCCcaCGGCGGGCCgUCGCu -5'
8948 5' -63.9 NC_002512.2 + 20843 0.66 0.656554
Target:  5'- aGCCGuCGGaaucgcuccGGgacgcgGCCGCCCcgcucauGGCGGCGAc -3'
miRNA:   3'- -UGGUuGCC---------CCa-----CGGCGGG-------CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 111290 0.66 0.6575
Target:  5'- gGCCGccGCGGGGagaggGCCGCCgaucGCGGCu- -3'
miRNA:   3'- -UGGU--UGCCCCa----CGGCGGgc--CGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 15661 0.66 0.63857
Target:  5'- aGCCGACGa---GCCGCCUgacgucccggGGCAGCGGg -3'
miRNA:   3'- -UGGUUGCcccaCGGCGGG----------CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 81955 0.66 0.666942
Target:  5'- gGCCGGCGcGcGGUGa-GCCCcgggcgggugguGGCGGCGGg -3'
miRNA:   3'- -UGGUUGC-C-CCACggCGGG------------CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 5208 0.66 0.676359
Target:  5'- gACC-GCGGGccaGCCGa-CGGCGGCGGg -3'
miRNA:   3'- -UGGuUGCCCca-CGGCggGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 12196 0.66 0.666942
Target:  5'- cGCCGGCGGGGaagaGCCagcccaagcGCCCGGaccCGAg -3'
miRNA:   3'- -UGGUUGCCCCa---CGG---------CGGGCCgucGCU- -5'
8948 5' -63.9 NC_002512.2 + 70857 0.66 0.6575
Target:  5'- uGCC-GCGGagaagucgucGGU-CCGCCCGGC-GCGGa -3'
miRNA:   3'- -UGGuUGCC----------CCAcGGCGGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 155371 0.66 0.666942
Target:  5'- cGCuCGAgguCGGGGcgGCgGCgCCGGCGGgCGAu -3'
miRNA:   3'- -UG-GUU---GCCCCa-CGgCG-GGCCGUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 83969 0.66 0.666942
Target:  5'- cCCGGCGGcGGa--UGCCCGGC-GCGGg -3'
miRNA:   3'- uGGUUGCC-CCacgGCGGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 135209 0.66 0.63857
Target:  5'- cGCCAGCGGGccgggggGCCcCCCGGCccCGGg -3'
miRNA:   3'- -UGGUUGCCCca-----CGGcGGGCCGucGCU- -5'
8948 5' -63.9 NC_002512.2 + 122270 0.66 0.676359
Target:  5'- gGCC-GCGGGGacguccUGgaGCCCGuCAGCGAg -3'
miRNA:   3'- -UGGuUGCCCC------ACggCGGGCcGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 92207 0.66 0.636676
Target:  5'- gGCCGcuaugACGGGGaucaccgauaugGCCGCCCGGUgaccGGUa- -3'
miRNA:   3'- -UGGU-----UGCCCCa-----------CGGCGGGCCG----UCGcu -5'
8948 5' -63.9 NC_002512.2 + 64351 0.66 0.64804
Target:  5'- aGCUcgauGACGGcGGUGCUggucuGCCCGuuGCAGCGc -3'
miRNA:   3'- -UGG----UUGCC-CCACGG-----CGGGC--CGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 46995 0.66 0.629096
Target:  5'- cGCCGAgaGGG-GCCGCuucuugCUGGCGGCGGa -3'
miRNA:   3'- -UGGUUgcCCCaCGGCG------GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 70725 0.66 0.63857
Target:  5'- --gGACGGGGggacgggaGCgCGCCCGGCcgccucacuuggAGCGGc -3'
miRNA:   3'- uggUUGCCCCa-------CG-GCGGGCCG------------UCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.