miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 159 0.68 0.563162
Target:  5'- cGCCGGCGGaGGaGCgCGCgCCGGgAGgGAc -3'
miRNA:   3'- -UGGUUGCC-CCaCG-GCG-GGCCgUCgCU- -5'
8948 5' -63.9 NC_002512.2 + 2064 0.66 0.64804
Target:  5'- cGCCAGCGGGaGcGCggaguccaCGCCgGGCgggAGCGGg -3'
miRNA:   3'- -UGGUUGCCC-CaCG--------GCGGgCCG---UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 2293 0.7 0.422177
Target:  5'- gGCCGcugcgggugGCGGGGcucUGCUGCgCCGGCGGUc- -3'
miRNA:   3'- -UGGU---------UGCCCC---ACGGCG-GGCCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 3069 0.72 0.345543
Target:  5'- gACgCGGCGGcGGcgGCgGCCaCGGCGGCGGc -3'
miRNA:   3'- -UG-GUUGCC-CCa-CGgCGG-GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 4438 0.75 0.208995
Target:  5'- gACCGGCGGGGUGCCggGCgCGGgGGuCGGc -3'
miRNA:   3'- -UGGUUGCCCCACGG--CGgGCCgUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 4855 0.71 0.360046
Target:  5'- gGCCAucGCGGGGUucGCCGCgugcggcgCCGGCuggaggagcGGCGAc -3'
miRNA:   3'- -UGGU--UGCCCCA--CGGCG--------GGCCG---------UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 5208 0.66 0.676359
Target:  5'- gACC-GCGGGccaGCCGa-CGGCGGCGGg -3'
miRNA:   3'- -UGGuUGCCCca-CGGCggGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 6329 0.67 0.623412
Target:  5'- cGCCcGCGGGGggaccgggcgcgggGCCGgCgGGCcGCGGg -3'
miRNA:   3'- -UGGuUGCCCCa-------------CGGCgGgCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 8839 0.71 0.398124
Target:  5'- gGCCAgACGGGcucGCUGCCgGGCGGCa- -3'
miRNA:   3'- -UGGU-UGCCCca-CGGCGGgCCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 10364 0.72 0.330771
Target:  5'- cGCCGACgaagacgGGGGUGCCGaacgCCGGcCAGCa- -3'
miRNA:   3'- -UGGUUG-------CCCCACGGCg---GGCC-GUCGcu -5'
8948 5' -63.9 NC_002512.2 + 12196 0.66 0.666942
Target:  5'- cGCCGGCGGGGaagaGCCagcccaagcGCCCGGaccCGAg -3'
miRNA:   3'- -UGGUUGCCCCa---CGG---------CGGGCCgucGCU- -5'
8948 5' -63.9 NC_002512.2 + 15661 0.66 0.63857
Target:  5'- aGCCGACGa---GCCGCCUgacgucccggGGCAGCGGg -3'
miRNA:   3'- -UGGUUGCcccaCGGCGGG----------CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 20843 0.66 0.656554
Target:  5'- aGCCGuCGGaaucgcuccGGgacgcgGCCGCCCcgcucauGGCGGCGAc -3'
miRNA:   3'- -UGGUuGCC---------CCa-----CGGCGGG-------CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 21076 0.66 0.685746
Target:  5'- cACgGGCGGcGGUcCCGCuCCGG-GGCGAc -3'
miRNA:   3'- -UGgUUGCC-CCAcGGCG-GGCCgUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 21218 0.69 0.455565
Target:  5'- gGCCccCGGGacGCCGCCCGG-GGCGGa -3'
miRNA:   3'- -UGGuuGCCCcaCGGCGGGCCgUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 21454 0.67 0.591279
Target:  5'- cUCGAuCGGGG-GCCgGCgCCGGgAGCGGc -3'
miRNA:   3'- uGGUU-GCCCCaCGG-CG-GGCCgUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 22073 0.66 0.665998
Target:  5'- cGCCGAguCGGGGUucggagaGCuCGUCCGGCcGgGAg -3'
miRNA:   3'- -UGGUU--GCCCCA-------CG-GCGGGCCGuCgCU- -5'
8948 5' -63.9 NC_002512.2 + 24831 0.67 0.581874
Target:  5'- aGCCAGuaggucCGGGcccgcgGCCGgUCGGCGGCGGa -3'
miRNA:   3'- -UGGUU------GCCCca----CGGCgGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 27970 0.66 0.685746
Target:  5'- cGCCGAUGGGcG-GCCGggcgagauUCCGGC-GCGGg -3'
miRNA:   3'- -UGGUUGCCC-CaCGGC--------GGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 29568 0.71 0.398124
Target:  5'- cGCCGGCGGGaaGCCGCUCcccgagGGCGGaCGAg -3'
miRNA:   3'- -UGGUUGCCCcaCGGCGGG------CCGUC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.