miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 76581 0.7 0.421362
Target:  5'- cCCAGCGGGaaccgGCCGaCCCGGaccgaccCAGCGGa -3'
miRNA:   3'- uGGUUGCCCca---CGGC-GGGCC-------GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 4855 0.71 0.360046
Target:  5'- gGCCAucGCGGGGUucGCCGCgugcggcgCCGGCuggaggagcGGCGAc -3'
miRNA:   3'- -UGGU--UGCCCCA--CGGCG--------GGCCG---------UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 95953 0.71 0.36671
Target:  5'- uCCGGCGGGGgGCUgagGCCCGgguuggcGCAGCGGc -3'
miRNA:   3'- uGGUUGCCCCaCGG---CGGGC-------CGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 105005 0.71 0.367455
Target:  5'- cGCCGugACGGGGccGCCGCCCGGUucuCGu -3'
miRNA:   3'- -UGGU--UGCCCCa-CGGCGGGCCGuc-GCu -5'
8948 5' -63.9 NC_002512.2 + 153964 0.71 0.374969
Target:  5'- uUCuuCGGGGUccgGCgGCgCCGGCGGCGGc -3'
miRNA:   3'- uGGuuGCCCCA---CGgCG-GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 8839 0.71 0.398124
Target:  5'- gGCCAgACGGGcucGCUGCCgGGCGGCa- -3'
miRNA:   3'- -UGGU-UGCCCca-CGGCGGgCCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 29568 0.71 0.398124
Target:  5'- cGCCGGCGGGaaGCCGCUCcccgagGGCGGaCGAg -3'
miRNA:   3'- -UGGUUGCCCcaCGGCGGG------CCGUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 106630 0.71 0.398124
Target:  5'- cGCCGG-GGGGUaGCgGCgCCGGCucGGCGAg -3'
miRNA:   3'- -UGGUUgCCCCA-CGgCG-GGCCG--UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 118074 0.7 0.414062
Target:  5'- cGCgGAgGGGGcgGCUccgGCgCCGGCGGCGAc -3'
miRNA:   3'- -UGgUUgCCCCa-CGG---CG-GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 120783 0.72 0.345543
Target:  5'- gGCCGucgGCGGGG-GCgGCgggaCGGCGGCGGu -3'
miRNA:   3'- -UGGU---UGCCCCaCGgCGg---GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 133795 0.72 0.345543
Target:  5'- -gCGGCGGGGacgacgGUCGCgCCGGguGCGGg -3'
miRNA:   3'- ugGUUGCCCCa-----CGGCG-GGCCguCGCU- -5'
8948 5' -63.9 NC_002512.2 + 57170 0.72 0.345543
Target:  5'- -aCAGCGGGuUGCCGCagggcaccucgCGGCAGCGGu -3'
miRNA:   3'- ugGUUGCCCcACGGCGg----------GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 4438 0.75 0.208995
Target:  5'- gACCGGCGGGGUGCCggGCgCGGgGGuCGGc -3'
miRNA:   3'- -UGGUUGCCCCACGG--CGgGCCgUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 68367 0.74 0.234076
Target:  5'- cCCGggcuCGGcGGUGCCGUCCGcGCAGCGc -3'
miRNA:   3'- uGGUu---GCC-CCACGGCGGGC-CGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 83706 0.74 0.267459
Target:  5'- aGCCca-GGGcgaccGUGCCGCgCGGCAGCGGg -3'
miRNA:   3'- -UGGuugCCC-----CACGGCGgGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 97349 0.73 0.304585
Target:  5'- gGCCGACGGc--GCCGCCCGcGgAGCGGg -3'
miRNA:   3'- -UGGUUGCCccaCGGCGGGC-CgUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 130132 0.72 0.317811
Target:  5'- gGCC--CGGGGUggugucgcgGCCgcgggGCCCGGCGGCGGg -3'
miRNA:   3'- -UGGuuGCCCCA---------CGG-----CGGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 10364 0.72 0.330771
Target:  5'- cGCCGACgaagacgGGGGUGCCGaacgCCGGcCAGCa- -3'
miRNA:   3'- -UGGUUG-------CCCCACGGCg---GGCC-GUCGcu -5'
8948 5' -63.9 NC_002512.2 + 126360 0.72 0.33845
Target:  5'- gGCCGGCGGcaacuuccugcuGGUcaccaacgcGCUGCCCGGCgAGCGGu -3'
miRNA:   3'- -UGGUUGCC------------CCA---------CGGCGGGCCG-UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 3069 0.72 0.345543
Target:  5'- gACgCGGCGGcGGcgGCgGCCaCGGCGGCGGc -3'
miRNA:   3'- -UG-GUUGCC-CCa-CGgCGG-GCCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.