miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 120201 0.66 0.685746
Target:  5'- cGCCG--GGGGUGCacaGCCUggacguggaacuGGUGGCGAc -3'
miRNA:   3'- -UGGUugCCCCACGg--CGGG------------CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 184641 0.66 0.6575
Target:  5'- gGCCGACGGcgaguccgcgGGcGCCGCgccgaaauCCGGuCGGCGGc -3'
miRNA:   3'- -UGGUUGCC----------CCaCGGCG--------GGCC-GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 195055 0.66 0.64804
Target:  5'- gGCCcGCGGGcGggaggGUCGUCCGGuCGGgGAc -3'
miRNA:   3'- -UGGuUGCCC-Ca----CGGCGGGCC-GUCgCU- -5'
8948 5' -63.9 NC_002512.2 + 221033 1.07 0.001163
Target:  5'- cACCAACGGGGUGCCGCCCGGCAGCGAg -3'
miRNA:   3'- -UGGUUGCCCCACGGCGGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 96218 0.66 0.685746
Target:  5'- gGCC-ACGGcG-GCCGCggCGGCGGCGGc -3'
miRNA:   3'- -UGGuUGCCcCaCGGCGg-GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 211496 0.66 0.684809
Target:  5'- uCCAGCaGGagcuccuGUGCCGCCacauCGGCcGCGAu -3'
miRNA:   3'- uGGUUGcCC-------CACGGCGG----GCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 146720 0.66 0.676359
Target:  5'- -aCGGCGGGGcgGCgGCCgCGGCcGCc- -3'
miRNA:   3'- ugGUUGCCCCa-CGgCGG-GCCGuCGcu -5'
8948 5' -63.9 NC_002512.2 + 74783 0.66 0.675419
Target:  5'- uCCAGggUGGGGagucgacUGCUGacgcccgggcaCCCGGCAGCGGc -3'
miRNA:   3'- uGGUU--GCCCC-------ACGGC-----------GGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 214627 0.66 0.666942
Target:  5'- gACCcucGCGGGGacgcggGCCGCCUcGCAGUc- -3'
miRNA:   3'- -UGGu--UGCCCCa-----CGGCGGGcCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 185533 0.66 0.6575
Target:  5'- uUCGAgGGGGUgGCCuaCCGGCcccGCGGc -3'
miRNA:   3'- uGGUUgCCCCA-CGGcgGGCCGu--CGCU- -5'
8948 5' -63.9 NC_002512.2 + 95637 0.66 0.666942
Target:  5'- gGCCAGgGGGcGgcucgGCCGCCCccGGCAcagccucucGUGAg -3'
miRNA:   3'- -UGGUUgCCC-Ca----CGGCGGG--CCGU---------CGCU- -5'
8948 5' -63.9 NC_002512.2 + 217572 0.66 0.666942
Target:  5'- -gCGACGGcGaGCCgGUCCGGCGGCGc -3'
miRNA:   3'- ugGUUGCCcCaCGG-CGGGCCGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 92991 0.66 0.685746
Target:  5'- cCCGACcuGGUgGCCGUCuCGGUGGCGGa -3'
miRNA:   3'- uGGUUGccCCA-CGGCGG-GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 222668 0.66 0.664111
Target:  5'- gGCCGA-GGGGcGCCucgaguucgacugcGCCCGGCA-CGGg -3'
miRNA:   3'- -UGGUUgCCCCaCGG--------------CGGGCCGUcGCU- -5'
8948 5' -63.9 NC_002512.2 + 87848 0.66 0.685746
Target:  5'- gGCCcucGCGGcGGgucGCCGgccCCCGGCcGCGGa -3'
miRNA:   3'- -UGGu--UGCC-CCa--CGGC---GGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 96642 0.66 0.673537
Target:  5'- aACCGcgacCGGGGcgccGCCGCCCucccguccucgcugGGCGGaCGAc -3'
miRNA:   3'- -UGGUu---GCCCCa---CGGCGGG--------------CCGUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 219318 0.66 0.661279
Target:  5'- gGCC-ACGGGGagagcgucggcgugGCCcgccggcuGCCCGGCGuccGCGAg -3'
miRNA:   3'- -UGGuUGCCCCa-------------CGG--------CGGGCCGU---CGCU- -5'
8948 5' -63.9 NC_002512.2 + 205639 0.66 0.6575
Target:  5'- uGCCcGCGGGGgacGCCG-UCGGCGGgccCGAc -3'
miRNA:   3'- -UGGuUGCCCCa--CGGCgGGCCGUC---GCU- -5'
8948 5' -63.9 NC_002512.2 + 164253 0.66 0.685746
Target:  5'- cGCCGugGCGGGG-GCCGUCgGGU--CGAu -3'
miRNA:   3'- -UGGU--UGCCCCaCGGCGGgCCGucGCU- -5'
8948 5' -63.9 NC_002512.2 + 223200 0.66 0.676359
Target:  5'- cCCGACGGGGacGgCGuCCCGG-AGCGc -3'
miRNA:   3'- uGGUUGCCCCa-CgGC-GGGCCgUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.