miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 116542 0.66 0.64804
Target:  5'- uGCCAGCugcuGGGGaugaacgGCCGCCUGuGCGaCGAg -3'
miRNA:   3'- -UGGUUG----CCCCa------CGGCGGGC-CGUcGCU- -5'
8948 5' -63.9 NC_002512.2 + 195055 0.66 0.64804
Target:  5'- gGCCcGCGGGcGggaggGUCGUCCGGuCGGgGAc -3'
miRNA:   3'- -UGGuUGCCC-Ca----CGGCGGGCC-GUCgCU- -5'
8948 5' -63.9 NC_002512.2 + 217572 0.66 0.666942
Target:  5'- -gCGACGGcGaGCCgGUCCGGCGGCGc -3'
miRNA:   3'- ugGUUGCCcCaCGG-CGGGCCGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 164253 0.66 0.685746
Target:  5'- cGCCGugGCGGGG-GCCGUCgGGU--CGAu -3'
miRNA:   3'- -UGGU--UGCCCCaCGGCGGgCCGucGCU- -5'
8948 5' -63.9 NC_002512.2 + 191330 0.67 0.610159
Target:  5'- --gGACGcGGGUGCCGUCCGcGaCGGgGGu -3'
miRNA:   3'- uggUUGC-CCCACGGCGGGC-C-GUCgCU- -5'
8948 5' -63.9 NC_002512.2 + 149490 0.66 0.630043
Target:  5'- cACCAuCGGGGgcggguggucaaaagGCCGCggCCGG-AGCGGg -3'
miRNA:   3'- -UGGUuGCCCCa--------------CGGCG--GGCCgUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 184641 0.66 0.6575
Target:  5'- gGCCGACGGcgaguccgcgGGcGCCGCgccgaaauCCGGuCGGCGGc -3'
miRNA:   3'- -UGGUUGCC----------CCaCGGCG--------GGCC-GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 87848 0.66 0.685746
Target:  5'- gGCCcucGCGGcGGgucGCCGgccCCCGGCcGCGGa -3'
miRNA:   3'- -UGGu--UGCC-CCa--CGGC---GGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 114779 0.66 0.637623
Target:  5'- -gCGACGGGGcacgGCgucccgaCGuCCCGGCAGaCGAc -3'
miRNA:   3'- ugGUUGCCCCa---CG-------GC-GGGCCGUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 92991 0.66 0.685746
Target:  5'- cCCGACcuGGUgGCCGUCuCGGUGGCGGa -3'
miRNA:   3'- uGGUUGccCCA-CGGCGG-GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 205639 0.66 0.6575
Target:  5'- uGCCcGCGGGGgacGCCG-UCGGCGGgccCGAc -3'
miRNA:   3'- -UGGuUGCCCCa--CGGCgGGCCGUC---GCU- -5'
8948 5' -63.9 NC_002512.2 + 158851 0.66 0.6452
Target:  5'- --gAGCGGGGggacgucgucgucgaCCGgCCGGCGGCGGc -3'
miRNA:   3'- uggUUGCCCCac-------------GGCgGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 222668 0.66 0.664111
Target:  5'- gGCCGA-GGGGcGCCucgaguucgacugcGCCCGGCA-CGGg -3'
miRNA:   3'- -UGGUUgCCCCaCGG--------------CGGGCCGUcGCU- -5'
8948 5' -63.9 NC_002512.2 + 214627 0.66 0.666942
Target:  5'- gACCcucGCGGGGacgcggGCCGCCUcGCAGUc- -3'
miRNA:   3'- -UGGu--UGCCCCa-----CGGCGGGcCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 146720 0.66 0.676359
Target:  5'- -aCGGCGGGGcgGCgGCCgCGGCcGCc- -3'
miRNA:   3'- ugGUUGCCCCa-CGgCGG-GCCGuCGcu -5'
8948 5' -63.9 NC_002512.2 + 96218 0.66 0.685746
Target:  5'- gGCC-ACGGcG-GCCGCggCGGCGGCGGc -3'
miRNA:   3'- -UGGuUGCCcCaCGGCGg-GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 161999 0.67 0.600709
Target:  5'- gACCugguGCGGGaugcgGaCCGCCUGGCcgacGGCGAg -3'
miRNA:   3'- -UGGu---UGCCCca---C-GGCGGGCCG----UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 167734 0.67 0.610159
Target:  5'- uCgAGCGGGGcgaggaGCUGCCgGGCgucGGCGAc -3'
miRNA:   3'- uGgUUGCCCCa-----CGGCGGgCCG---UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 149001 0.67 0.619623
Target:  5'- cACCGGcCGGGGgGCCGCCgCGGaCcGCc- -3'
miRNA:   3'- -UGGUU-GCCCCaCGGCGG-GCC-GuCGcu -5'
8948 5' -63.9 NC_002512.2 + 206885 0.66 0.629096
Target:  5'- cGCCGACGGGuaggucaccaGcGCCGCCCGcgucccGCcGCGGg -3'
miRNA:   3'- -UGGUUGCCC----------CaCGGCGGGC------CGuCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.