miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 126360 0.72 0.33845
Target:  5'- gGCCGGCGGcaacuuccugcuGGUcaccaacgcGCUGCCCGGCgAGCGGu -3'
miRNA:   3'- -UGGUUGCC------------CCA---------CGGCGGGCCG-UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 120783 0.72 0.345543
Target:  5'- gGCCGucgGCGGGG-GCgGCgggaCGGCGGCGGu -3'
miRNA:   3'- -UGGU---UGCCCCaCGgCGg---GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 207598 0.72 0.345543
Target:  5'- gGCCugcGACGGcGGcgGCUGCUgCGGCGGCGAg -3'
miRNA:   3'- -UGG---UUGCC-CCa-CGGCGG-GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 57170 0.72 0.345543
Target:  5'- -aCAGCGGGuUGCCGCagggcaccucgCGGCAGCGGu -3'
miRNA:   3'- ugGUUGCCCcACGGCGg----------GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 3069 0.72 0.345543
Target:  5'- gACgCGGCGGcGGcgGCgGCCaCGGCGGCGGc -3'
miRNA:   3'- -UG-GUUGCC-CCa-CGgCGG-GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 133795 0.72 0.345543
Target:  5'- -gCGGCGGGGacgacgGUCGCgCCGGguGCGGg -3'
miRNA:   3'- ugGUUGCCCCa-----CGGCG-GGCCguCGCU- -5'
8948 5' -63.9 NC_002512.2 + 132092 0.71 0.352742
Target:  5'- aGCCGGagcgcucggacCGGGGcucgaggGCCGCCCGGUAggccGCGAg -3'
miRNA:   3'- -UGGUU-----------GCCCCa------CGGCGGGCCGU----CGCU- -5'
8948 5' -63.9 NC_002512.2 + 4855 0.71 0.360046
Target:  5'- gGCCAucGCGGGGUucGCCGCgugcggcgCCGGCuggaggagcGGCGAc -3'
miRNA:   3'- -UGGU--UGCCCCA--CGGCG--------GGCCG---------UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 95953 0.71 0.36671
Target:  5'- uCCGGCGGGGgGCUgagGCCCGgguuggcGCAGCGGc -3'
miRNA:   3'- uGGUUGCCCCaCGG---CGGGC-------CGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 105005 0.71 0.367455
Target:  5'- cGCCGugACGGGGccGCCGCCCGGUucuCGu -3'
miRNA:   3'- -UGGU--UGCCCCa-CGGCGGGCCGuc-GCu -5'
8948 5' -63.9 NC_002512.2 + 188649 0.71 0.367455
Target:  5'- cGCCGGCGGcGGcgGCgGCCCGucguccgaccGCGGCGGu -3'
miRNA:   3'- -UGGUUGCC-CCa-CGgCGGGC----------CGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 96753 0.71 0.367455
Target:  5'- aGCgAGCGGGGccCCGUCCGaGCGGCGc -3'
miRNA:   3'- -UGgUUGCCCCacGGCGGGC-CGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 158931 0.71 0.374213
Target:  5'- uUCGGCGGGGgcgccgGCgGCCucucggucagcaaCGGCGGCGAg -3'
miRNA:   3'- uGGUUGCCCCa-----CGgCGG-------------GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 153964 0.71 0.374969
Target:  5'- uUCuuCGGGGUccgGCgGCgCCGGCGGCGGc -3'
miRNA:   3'- uGGuuGCCCCA---CGgCG-GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 170816 0.71 0.374969
Target:  5'- -gCGACGGGG-GCgGCagcggCGGCAGCGGc -3'
miRNA:   3'- ugGUUGCCCCaCGgCGg----GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 90496 0.71 0.382586
Target:  5'- cUCGACGGGaucgggGCCGaggCCGGCGGCGGa -3'
miRNA:   3'- uGGUUGCCCca----CGGCg--GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 224620 0.71 0.382586
Target:  5'- gACCGggcuCGGGGUcGCCGCCgCGGCcuCGGc -3'
miRNA:   3'- -UGGUu---GCCCCA-CGGCGG-GCCGucGCU- -5'
8948 5' -63.9 NC_002512.2 + 96513 0.71 0.382586
Target:  5'- gACCGcCGGaGGgaGCCGCgCCGGCGGUGu -3'
miRNA:   3'- -UGGUuGCC-CCa-CGGCG-GGCCGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 213354 0.71 0.390305
Target:  5'- aGCCAG-GGGGacGcCCGCgCUGGCGGCGAc -3'
miRNA:   3'- -UGGUUgCCCCa-C-GGCG-GGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 204725 0.71 0.390305
Target:  5'- gGCCcggGGCGGGGgGCCGgaCCCGGguGCu- -3'
miRNA:   3'- -UGG---UUGCCCCaCGGC--GGGCCguCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.