Results 21 - 40 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8948 | 5' | -63.9 | NC_002512.2 | + | 155371 | 0.66 | 0.666942 |
Target: 5'- cGCuCGAgguCGGGGcgGCgGCgCCGGCGGgCGAu -3' miRNA: 3'- -UG-GUU---GCCCCa-CGgCG-GGCCGUC-GCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 83969 | 0.66 | 0.666942 |
Target: 5'- cCCGGCGGcGGa--UGCCCGGC-GCGGg -3' miRNA: 3'- uGGUUGCC-CCacgGCGGGCCGuCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 81955 | 0.66 | 0.666942 |
Target: 5'- gGCCGGCGcGcGGUGa-GCCCcgggcgggugguGGCGGCGGg -3' miRNA: 3'- -UGGUUGC-C-CCACggCGGG------------CCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 12196 | 0.66 | 0.666942 |
Target: 5'- cGCCGGCGGGGaagaGCCagcccaagcGCCCGGaccCGAg -3' miRNA: 3'- -UGGUUGCCCCa---CGG---------CGGGCCgucGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 214627 | 0.66 | 0.666942 |
Target: 5'- gACCcucGCGGGGacgcggGCCGCCUcGCAGUc- -3' miRNA: 3'- -UGGu--UGCCCCa-----CGGCGGGcCGUCGcu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 217572 | 0.66 | 0.666942 |
Target: 5'- -gCGACGGcGaGCCgGUCCGGCGGCGc -3' miRNA: 3'- ugGUUGCCcCaCGG-CGGGCCGUCGCu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 213526 | 0.66 | 0.666942 |
Target: 5'- uCCGGguCGGGGUGCC-CUCGG-AGCGu -3' miRNA: 3'- uGGUU--GCCCCACGGcGGGCCgUCGCu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 95637 | 0.66 | 0.666942 |
Target: 5'- gGCCAGgGGGcGgcucgGCCGCCCccGGCAcagccucucGUGAg -3' miRNA: 3'- -UGGUUgCCC-Ca----CGGCGGG--CCGU---------CGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 22073 | 0.66 | 0.665998 |
Target: 5'- cGCCGAguCGGGGUucggagaGCuCGUCCGGCcGgGAg -3' miRNA: 3'- -UGGUU--GCCCCA-------CG-GCGGGCCGuCgCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 222668 | 0.66 | 0.664111 |
Target: 5'- gGCCGA-GGGGcGCCucgaguucgacugcGCCCGGCA-CGGg -3' miRNA: 3'- -UGGUUgCCCCaCGG--------------CGGGCCGUcGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 219318 | 0.66 | 0.661279 |
Target: 5'- gGCC-ACGGGGagagcgucggcgugGCCcgccggcuGCCCGGCGuccGCGAg -3' miRNA: 3'- -UGGuUGCCCCa-------------CGG--------CGGGCCGU---CGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 185533 | 0.66 | 0.6575 |
Target: 5'- uUCGAgGGGGUgGCCuaCCGGCcccGCGGc -3' miRNA: 3'- uGGUUgCCCCA-CGGcgGGCCGu--CGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 111290 | 0.66 | 0.6575 |
Target: 5'- gGCCGccGCGGGGagaggGCCGCCgaucGCGGCu- -3' miRNA: 3'- -UGGU--UGCCCCa----CGGCGGgc--CGUCGcu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 70857 | 0.66 | 0.6575 |
Target: 5'- uGCC-GCGGagaagucgucGGU-CCGCCCGGC-GCGGa -3' miRNA: 3'- -UGGuUGCC----------CCAcGGCGGGCCGuCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 205639 | 0.66 | 0.6575 |
Target: 5'- uGCCcGCGGGGgacGCCG-UCGGCGGgccCGAc -3' miRNA: 3'- -UGGuUGCCCCa--CGGCgGGCCGUC---GCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 184641 | 0.66 | 0.6575 |
Target: 5'- gGCCGACGGcgaguccgcgGGcGCCGCgccgaaauCCGGuCGGCGGc -3' miRNA: 3'- -UGGUUGCC----------CCaCGGCG--------GGCC-GUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 49436 | 0.66 | 0.6575 |
Target: 5'- aGCCGucgagaaaugACGGGc-GCCGCCCGG-GGCGc -3' miRNA: 3'- -UGGU----------UGCCCcaCGGCGGGCCgUCGCu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 20843 | 0.66 | 0.656554 |
Target: 5'- aGCCGuCGGaaucgcuccGGgacgcgGCCGCCCcgcucauGGCGGCGAc -3' miRNA: 3'- -UGGUuGCC---------CCa-----CGGCGGG-------CCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 64351 | 0.66 | 0.64804 |
Target: 5'- aGCUcgauGACGGcGGUGCUggucuGCCCGuuGCAGCGc -3' miRNA: 3'- -UGG----UUGCC-CCACGG-----CGGGC--CGUCGCu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 2064 | 0.66 | 0.64804 |
Target: 5'- cGCCAGCGGGaGcGCggaguccaCGCCgGGCgggAGCGGg -3' miRNA: 3'- -UGGUUGCCC-CaCG--------GCGGgCCG---UCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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