miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 155371 0.66 0.666942
Target:  5'- cGCuCGAgguCGGGGcgGCgGCgCCGGCGGgCGAu -3'
miRNA:   3'- -UG-GUU---GCCCCa-CGgCG-GGCCGUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 83969 0.66 0.666942
Target:  5'- cCCGGCGGcGGa--UGCCCGGC-GCGGg -3'
miRNA:   3'- uGGUUGCC-CCacgGCGGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 81955 0.66 0.666942
Target:  5'- gGCCGGCGcGcGGUGa-GCCCcgggcgggugguGGCGGCGGg -3'
miRNA:   3'- -UGGUUGC-C-CCACggCGGG------------CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 12196 0.66 0.666942
Target:  5'- cGCCGGCGGGGaagaGCCagcccaagcGCCCGGaccCGAg -3'
miRNA:   3'- -UGGUUGCCCCa---CGG---------CGGGCCgucGCU- -5'
8948 5' -63.9 NC_002512.2 + 214627 0.66 0.666942
Target:  5'- gACCcucGCGGGGacgcggGCCGCCUcGCAGUc- -3'
miRNA:   3'- -UGGu--UGCCCCa-----CGGCGGGcCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 217572 0.66 0.666942
Target:  5'- -gCGACGGcGaGCCgGUCCGGCGGCGc -3'
miRNA:   3'- ugGUUGCCcCaCGG-CGGGCCGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 213526 0.66 0.666942
Target:  5'- uCCGGguCGGGGUGCC-CUCGG-AGCGu -3'
miRNA:   3'- uGGUU--GCCCCACGGcGGGCCgUCGCu -5'
8948 5' -63.9 NC_002512.2 + 95637 0.66 0.666942
Target:  5'- gGCCAGgGGGcGgcucgGCCGCCCccGGCAcagccucucGUGAg -3'
miRNA:   3'- -UGGUUgCCC-Ca----CGGCGGG--CCGU---------CGCU- -5'
8948 5' -63.9 NC_002512.2 + 22073 0.66 0.665998
Target:  5'- cGCCGAguCGGGGUucggagaGCuCGUCCGGCcGgGAg -3'
miRNA:   3'- -UGGUU--GCCCCA-------CG-GCGGGCCGuCgCU- -5'
8948 5' -63.9 NC_002512.2 + 222668 0.66 0.664111
Target:  5'- gGCCGA-GGGGcGCCucgaguucgacugcGCCCGGCA-CGGg -3'
miRNA:   3'- -UGGUUgCCCCaCGG--------------CGGGCCGUcGCU- -5'
8948 5' -63.9 NC_002512.2 + 219318 0.66 0.661279
Target:  5'- gGCC-ACGGGGagagcgucggcgugGCCcgccggcuGCCCGGCGuccGCGAg -3'
miRNA:   3'- -UGGuUGCCCCa-------------CGG--------CGGGCCGU---CGCU- -5'
8948 5' -63.9 NC_002512.2 + 185533 0.66 0.6575
Target:  5'- uUCGAgGGGGUgGCCuaCCGGCcccGCGGc -3'
miRNA:   3'- uGGUUgCCCCA-CGGcgGGCCGu--CGCU- -5'
8948 5' -63.9 NC_002512.2 + 111290 0.66 0.6575
Target:  5'- gGCCGccGCGGGGagaggGCCGCCgaucGCGGCu- -3'
miRNA:   3'- -UGGU--UGCCCCa----CGGCGGgc--CGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 70857 0.66 0.6575
Target:  5'- uGCC-GCGGagaagucgucGGU-CCGCCCGGC-GCGGa -3'
miRNA:   3'- -UGGuUGCC----------CCAcGGCGGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 205639 0.66 0.6575
Target:  5'- uGCCcGCGGGGgacGCCG-UCGGCGGgccCGAc -3'
miRNA:   3'- -UGGuUGCCCCa--CGGCgGGCCGUC---GCU- -5'
8948 5' -63.9 NC_002512.2 + 184641 0.66 0.6575
Target:  5'- gGCCGACGGcgaguccgcgGGcGCCGCgccgaaauCCGGuCGGCGGc -3'
miRNA:   3'- -UGGUUGCC----------CCaCGGCG--------GGCC-GUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 49436 0.66 0.6575
Target:  5'- aGCCGucgagaaaugACGGGc-GCCGCCCGG-GGCGc -3'
miRNA:   3'- -UGGU----------UGCCCcaCGGCGGGCCgUCGCu -5'
8948 5' -63.9 NC_002512.2 + 20843 0.66 0.656554
Target:  5'- aGCCGuCGGaaucgcuccGGgacgcgGCCGCCCcgcucauGGCGGCGAc -3'
miRNA:   3'- -UGGUuGCC---------CCa-----CGGCGGG-------CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 64351 0.66 0.64804
Target:  5'- aGCUcgauGACGGcGGUGCUggucuGCCCGuuGCAGCGc -3'
miRNA:   3'- -UGG----UUGCC-CCACGG-----CGGGC--CGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 2064 0.66 0.64804
Target:  5'- cGCCAGCGGGaGcGCggaguccaCGCCgGGCgggAGCGGg -3'
miRNA:   3'- -UGGUUGCCC-CaCG--------GCGGgCCG---UCGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.