miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 135339 0.66 0.685746
Target:  5'- aGCCGcgcCGGGGUGCUGCU-GGCcGuCGAc -3'
miRNA:   3'- -UGGUu--GCCCCACGGCGGgCCGuC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 21076 0.66 0.685746
Target:  5'- cACgGGCGGcGGUcCCGCuCCGG-GGCGAc -3'
miRNA:   3'- -UGgUUGCC-CCAcGGCG-GGCCgUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 96218 0.66 0.685746
Target:  5'- gGCC-ACGGcG-GCCGCggCGGCGGCGGc -3'
miRNA:   3'- -UGGuUGCCcCaCGGCGg-GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 57354 0.66 0.685746
Target:  5'- gGCCugguugggGACGGGGaUGCCGaagGGCAGgGAg -3'
miRNA:   3'- -UGG--------UUGCCCC-ACGGCgggCCGUCgCU- -5'
8948 5' -63.9 NC_002512.2 + 27970 0.66 0.685746
Target:  5'- cGCCGAUGGGcG-GCCGggcgagauUCCGGC-GCGGg -3'
miRNA:   3'- -UGGUUGCCC-CaCGGC--------GGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 120201 0.66 0.685746
Target:  5'- cGCCG--GGGGUGCacaGCCUggacguggaacuGGUGGCGAc -3'
miRNA:   3'- -UGGUugCCCCACGg--CGGG------------CCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 87848 0.66 0.685746
Target:  5'- gGCCcucGCGGcGGgucGCCGgccCCCGGCcGCGGa -3'
miRNA:   3'- -UGGu--UGCC-CCa--CGGC---GGGCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 164253 0.66 0.685746
Target:  5'- cGCCGugGCGGGG-GCCGUCgGGU--CGAu -3'
miRNA:   3'- -UGGU--UGCCCCaCGGCGGgCCGucGCU- -5'
8948 5' -63.9 NC_002512.2 + 92991 0.66 0.685746
Target:  5'- cCCGACcuGGUgGCCGUCuCGGUGGCGGa -3'
miRNA:   3'- uGGUUGccCCA-CGGCGG-GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 211496 0.66 0.684809
Target:  5'- uCCAGCaGGagcuccuGUGCCGCCacauCGGCcGCGAu -3'
miRNA:   3'- uGGUUGcCC-------CACGGCGG----GCCGuCGCU- -5'
8948 5' -63.9 NC_002512.2 + 116707 0.66 0.684809
Target:  5'- aGCgGACGGcgacgccGGUcgcgucCCGCCCGGCcgcGGCGAg -3'
miRNA:   3'- -UGgUUGCC-------CCAc-----GGCGGGCCG---UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 103204 0.66 0.682933
Target:  5'- gGCgAGCGGGGguauccgaggcggcUcgcgucGCCGCCCGucgacggccGCGGCGAg -3'
miRNA:   3'- -UGgUUGCCCC--------------A------CGGCGGGC---------CGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 223200 0.66 0.676359
Target:  5'- cCCGACGGGGacGgCGuCCCGG-AGCGc -3'
miRNA:   3'- uGGUUGCCCCa-CgGC-GGGCCgUCGCu -5'
8948 5' -63.9 NC_002512.2 + 146720 0.66 0.676359
Target:  5'- -aCGGCGGGGcgGCgGCCgCGGCcGCc- -3'
miRNA:   3'- ugGUUGCCCCa-CGgCGG-GCCGuCGcu -5'
8948 5' -63.9 NC_002512.2 + 5208 0.66 0.676359
Target:  5'- gACC-GCGGGccaGCCGa-CGGCGGCGGg -3'
miRNA:   3'- -UGGuUGCCCca-CGGCggGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 122270 0.66 0.676359
Target:  5'- gGCC-GCGGGGacguccUGgaGCCCGuCAGCGAg -3'
miRNA:   3'- -UGGuUGCCCC------ACggCGGGCcGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 137090 0.66 0.676359
Target:  5'- gGCCcGCGGuGUG-CGCCCaGGCGcGCGGg -3'
miRNA:   3'- -UGGuUGCCcCACgGCGGG-CCGU-CGCU- -5'
8948 5' -63.9 NC_002512.2 + 48347 0.66 0.676359
Target:  5'- cAUCGcGCGGGcGUGCgaGCUgcugaaCGGCAGCGAc -3'
miRNA:   3'- -UGGU-UGCCC-CACGg-CGG------GCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 74783 0.66 0.675419
Target:  5'- uCCAGggUGGGGagucgacUGCUGacgcccgggcaCCCGGCAGCGGc -3'
miRNA:   3'- uGGUU--GCCCC-------ACGGC-----------GGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 96642 0.66 0.673537
Target:  5'- aACCGcgacCGGGGcgccGCCGCCCucccguccucgcugGGCGGaCGAc -3'
miRNA:   3'- -UGGUu---GCCCCa---CGGCGGG--------------CCGUC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.