miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 5' -63.9 NC_002512.2 + 221033 1.07 0.001163
Target:  5'- cACCAACGGGGUGCCGCCCGGCAGCGAg -3'
miRNA:   3'- -UGGUUGCCCCACGGCGGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 111084 0.8 0.094892
Target:  5'- gACCAcgACGGGGgcccacagcucCCGCCCGGCGGCGGa -3'
miRNA:   3'- -UGGU--UGCCCCac---------GGCGGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 213743 0.78 0.133874
Target:  5'- gACCGACcGGGcgcagGCCGCCCGGCAGaUGAu -3'
miRNA:   3'- -UGGUUGcCCCa----CGGCGGGCCGUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 139252 0.75 0.204266
Target:  5'- gGCCGcgGCGccGGGUcgcGCCGCCCGGCGcGCGGg -3'
miRNA:   3'- -UGGU--UGC--CCCA---CGGCGGGCCGU-CGCU- -5'
8948 5' -63.9 NC_002512.2 + 4438 0.75 0.208995
Target:  5'- gACCGGCGGGGUGCCggGCgCGGgGGuCGGc -3'
miRNA:   3'- -UGGUUGCCCCACGG--CGgGCCgUC-GCU- -5'
8948 5' -63.9 NC_002512.2 + 112913 0.75 0.208995
Target:  5'- cGCCcgGACGGGGcgucgGCgGCCCGGUGGCGc -3'
miRNA:   3'- -UGG--UUGCCCCa----CGgCGGGCCGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 169533 0.75 0.218738
Target:  5'- aGCUcgAACGGGucccgGCUGCCCGGCGGCGu -3'
miRNA:   3'- -UGG--UUGCCCca---CGGCGGGCCGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 68367 0.74 0.234076
Target:  5'- cCCGggcuCGGcGGUGCCGUCCGcGCAGCGc -3'
miRNA:   3'- uGGUu---GCC-CCACGGCGGGC-CGUCGCu -5'
8948 5' -63.9 NC_002512.2 + 83706 0.74 0.267459
Target:  5'- aGCCca-GGGcgaccGUGCCGCgCGGCAGCGGg -3'
miRNA:   3'- -UGGuugCCC-----CACGGCGgGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 209024 0.73 0.285547
Target:  5'- cGCCAugaGCGGGGcgGCCGCgucCCGG-AGCGAu -3'
miRNA:   3'- -UGGU---UGCCCCa-CGGCG---GGCCgUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 99506 0.73 0.291787
Target:  5'- uGCCAgACGGGGUugGCgGCCUGGCcGCGc -3'
miRNA:   3'- -UGGU-UGCCCCA--CGgCGGGCCGuCGCu -5'
8948 5' -63.9 NC_002512.2 + 217106 0.73 0.291787
Target:  5'- -gCAGCGGGGgcGCCGCCgaguccugcggCGGCAGCa- -3'
miRNA:   3'- ugGUUGCCCCa-CGGCGG-----------GCCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 97349 0.73 0.304585
Target:  5'- gGCCGACGGc--GCCGCCCGcGgAGCGGg -3'
miRNA:   3'- -UGGUUGCCccaCGGCGGGC-CgUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 129919 0.73 0.304585
Target:  5'- aGCCAccGCGGGGccagGCCGaucaggcaCCGGCGGCa- -3'
miRNA:   3'- -UGGU--UGCCCCa---CGGCg-------GGCCGUCGcu -5'
8948 5' -63.9 NC_002512.2 + 130132 0.72 0.317811
Target:  5'- gGCC--CGGGGUggugucgcgGCCgcgggGCCCGGCGGCGGg -3'
miRNA:   3'- -UGGuuGCCCCA---------CGG-----CGGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 156519 0.72 0.317811
Target:  5'- -gCGGCGGGGcGCggggGUCCGGCGGCGGg -3'
miRNA:   3'- ugGUUGCCCCaCGg---CGGGCCGUCGCU- -5'
8948 5' -63.9 NC_002512.2 + 200714 0.72 0.324584
Target:  5'- -gCGuCGGGcUGCCGCCCGGCGGUccGAa -3'
miRNA:   3'- ugGUuGCCCcACGGCGGGCCGUCG--CU- -5'
8948 5' -63.9 NC_002512.2 + 10364 0.72 0.330771
Target:  5'- cGCCGACgaagacgGGGGUGCCGaacgCCGGcCAGCa- -3'
miRNA:   3'- -UGGUUG-------CCCCACGGCg---GGCC-GUCGcu -5'
8948 5' -63.9 NC_002512.2 + 133257 0.72 0.330771
Target:  5'- cCCGGCGGGGaagaUGCCGCCgacgaGGCgauugagGGCGAg -3'
miRNA:   3'- uGGUUGCCCC----ACGGCGGg----CCG-------UCGCU- -5'
8948 5' -63.9 NC_002512.2 + 126360 0.72 0.33845
Target:  5'- gGCCGGCGGcaacuuccugcuGGUcaccaacgcGCUGCCCGGCgAGCGGu -3'
miRNA:   3'- -UGGUUGCC------------CCA---------CGGCGGGCCG-UCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.