Results 41 - 60 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8948 | 5' | -63.9 | NC_002512.2 | + | 130132 | 0.72 | 0.317811 |
Target: 5'- gGCC--CGGGGUggugucgcgGCCgcgggGCCCGGCGGCGGg -3' miRNA: 3'- -UGGuuGCCCCA---------CGG-----CGGGCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 97349 | 0.73 | 0.304585 |
Target: 5'- gGCCGACGGc--GCCGCCCGcGgAGCGGg -3' miRNA: 3'- -UGGUUGCCccaCGGCGGGC-CgUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 83706 | 0.74 | 0.267459 |
Target: 5'- aGCCca-GGGcgaccGUGCCGCgCGGCAGCGGg -3' miRNA: 3'- -UGGuugCCC-----CACGGCGgGCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 68367 | 0.74 | 0.234076 |
Target: 5'- cCCGggcuCGGcGGUGCCGUCCGcGCAGCGc -3' miRNA: 3'- uGGUu---GCC-CCACGGCGGGC-CGUCGCu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 4438 | 0.75 | 0.208995 |
Target: 5'- gACCGGCGGGGUGCCggGCgCGGgGGuCGGc -3' miRNA: 3'- -UGGUUGCCCCACGG--CGgGCCgUC-GCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 105005 | 0.71 | 0.367455 |
Target: 5'- cGCCGugACGGGGccGCCGCCCGGUucuCGu -3' miRNA: 3'- -UGGU--UGCCCCa-CGGCGGGCCGuc-GCu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 153964 | 0.71 | 0.374969 |
Target: 5'- uUCuuCGGGGUccgGCgGCgCCGGCGGCGGc -3' miRNA: 3'- uGGuuGCCCCA---CGgCG-GGCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 76539 | 0.69 | 0.471916 |
Target: 5'- cCCAGCGGGacccGCCGaCCCGGaccggccCAGCGGa -3' miRNA: 3'- uGGUUGCCCca--CGGC-GGGCC-------GUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 21218 | 0.69 | 0.455565 |
Target: 5'- gGCCccCGGGacGCCGCCCGG-GGCGGa -3' miRNA: 3'- -UGGuuGCCCcaCGGCGGGCCgUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 42930 | 0.7 | 0.447083 |
Target: 5'- gGCCcgggAGCGGGGgaucuCCGCCaGGUAGCGGu -3' miRNA: 3'- -UGG----UUGCCCCac---GGCGGgCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 75564 | 0.7 | 0.437855 |
Target: 5'- cGCCGggGCGGGGccGCCGCCgucgcggucgacgUGGCGGCu- -3' miRNA: 3'- -UGGU--UGCCCCa-CGGCGG-------------GCCGUCGcu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 80938 | 0.7 | 0.422177 |
Target: 5'- cCCGGCGGuaGGUGCCGuCCCGGgucuGGCGc -3' miRNA: 3'- uGGUUGCC--CCACGGC-GGGCCg---UCGCu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 75090 | 0.7 | 0.422177 |
Target: 5'- cGCCGuuuCGGGGgcucgacgucGCCGCCUGGCGGaCa- -3' miRNA: 3'- -UGGUu--GCCCCa---------CGGCGGGCCGUC-Gcu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 49665 | 0.7 | 0.422177 |
Target: 5'- cACguACGGGGcGCgGgCCGGCAGCc- -3' miRNA: 3'- -UGguUGCCCCaCGgCgGGCCGUCGcu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 2293 | 0.7 | 0.422177 |
Target: 5'- gGCCGcugcgggugGCGGGGcucUGCUGCgCCGGCGGUc- -3' miRNA: 3'- -UGGU---------UGCCCC---ACGGCG-GGCCGUCGcu -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 76581 | 0.7 | 0.421362 |
Target: 5'- cCCAGCGGGaaccgGCCGaCCCGGaccgaccCAGCGGa -3' miRNA: 3'- uGGUUGCCCca---CGGC-GGGCC-------GUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 118074 | 0.7 | 0.414062 |
Target: 5'- cGCgGAgGGGGcgGCUccgGCgCCGGCGGCGAc -3' miRNA: 3'- -UGgUUgCCCCa-CGG---CG-GGCCGUCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 106630 | 0.71 | 0.398124 |
Target: 5'- cGCCGG-GGGGUaGCgGCgCCGGCucGGCGAg -3' miRNA: 3'- -UGGUUgCCCCA-CGgCG-GGCCG--UCGCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 29568 | 0.71 | 0.398124 |
Target: 5'- cGCCGGCGGGaaGCCGCUCcccgagGGCGGaCGAg -3' miRNA: 3'- -UGGUUGCCCcaCGGCGGG------CCGUC-GCU- -5' |
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8948 | 5' | -63.9 | NC_002512.2 | + | 8839 | 0.71 | 0.398124 |
Target: 5'- gGCCAgACGGGcucGCUGCCgGGCGGCa- -3' miRNA: 3'- -UGGU-UGCCCca-CGGCGGgCCGUCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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