miRNA display CGI


Results 61 - 80 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 222405 0.73 0.272778
Target:  5'- aGCGCCgcgGCUuCGGCGGGGgCCGGCaGCc -3'
miRNA:   3'- -UGCGGa--UGGcGCCGCCCC-GGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 102152 0.73 0.266916
Target:  5'- -gGCCgcgACCGCGGCuGGGUCGuCGAUc -3'
miRNA:   3'- ugCGGa--UGGCGCCGcCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 137 0.73 0.278744
Target:  5'- aACGCCggggaGCCG-GGCGGGgcGCCGGCGGa -3'
miRNA:   3'- -UGCGGa----UGGCgCCGCCC--CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 227505 0.73 0.278744
Target:  5'- gACGCCgcgACC-CGGgGGGGagaguCCGGCGGCg -3'
miRNA:   3'- -UGCGGa--UGGcGCCgCCCC-----GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 92689 0.72 0.323419
Target:  5'- cGCGCCgcccACCG-GGCGGa-CCGACGACg -3'
miRNA:   3'- -UGCGGa---UGGCgCCGCCccGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 202521 0.72 0.344138
Target:  5'- gGCGgagGCgGCGGCgGGGGCgGACGACc -3'
miRNA:   3'- -UGCggaUGgCGCCG-CCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 156512 0.72 0.344138
Target:  5'- -gGCCUGg-GCGGCGGGGCgcgggggucCGGCGGCg -3'
miRNA:   3'- ugCGGAUggCGCCGCCCCG---------GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 138198 0.72 0.344138
Target:  5'- cGCGgacauCCUACCGU--CGGGGCCGACgGACg -3'
miRNA:   3'- -UGC-----GGAUGGCGccGCCCCGGCUG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 203140 0.72 0.337127
Target:  5'- -gGCCaucACCGUGGCGuacagcGGcGCCGGCGACg -3'
miRNA:   3'- ugCGGa--UGGCGCCGC------CC-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 143561 0.72 0.323419
Target:  5'- cGCGUCUccCCGCGG-GcGGGCCGGCGGa -3'
miRNA:   3'- -UGCGGAu-GGCGCCgC-CCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 116886 0.72 0.33022
Target:  5'- cGCGgCUG--GCGGCGGGGCCGG-GGCg -3'
miRNA:   3'- -UGCgGAUggCGCCGCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 88972 0.72 0.303645
Target:  5'- uGCGUCUGggucuccggcuUCGUGGCcggGGGGCCGACGGa -3'
miRNA:   3'- -UGCGGAU-----------GGCGCCG---CCCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 131740 0.72 0.344138
Target:  5'- gGCGaCC-GCCGgGGCGGgcGGCCG-CGACg -3'
miRNA:   3'- -UGC-GGaUGGCgCCGCC--CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 5167 0.72 0.337127
Target:  5'- gGCGCg-ACCGgGGCGGcGGCCGGCc-- -3'
miRNA:   3'- -UGCGgaUGGCgCCGCC-CCGGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 222512 0.72 0.310131
Target:  5'- uGCGCCUggccgcccGCCGCGGCcgccgucgcgGuGGGCCGggcuACGGCg -3'
miRNA:   3'- -UGCGGA--------UGGCGCCG----------C-CCCGGC----UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 134106 0.72 0.334352
Target:  5'- gGCGCCUACCGCucGGacgcccccguccaGGcGGCCGucGCGGCg -3'
miRNA:   3'- -UGCGGAUGGCG--CCg------------CC-CCGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 186339 0.72 0.316722
Target:  5'- gACGCCgucauCCGCGacaacgucuuCGGGGCCGGgGACg -3'
miRNA:   3'- -UGCGGau---GGCGCc---------GCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 22969 0.72 0.33022
Target:  5'- -aGCCguucaucacCCGCGGCGGGacGCgGGCGGCg -3'
miRNA:   3'- ugCGGau-------GGCGCCGCCC--CGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 11666 0.72 0.323419
Target:  5'- gGCGCCgcggcccGCCGCGGCccgaggcgGGGGCCcgaggGGCGAg -3'
miRNA:   3'- -UGCGGa------UGGCGCCG--------CCCCGG-----CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 121826 0.72 0.308174
Target:  5'- uCGCCgucgGCCGgacgggggggaggaCGGCGGGGaggaCGGCGGCg -3'
miRNA:   3'- uGCGGa---UGGC--------------GCCGCCCCg---GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.