miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 22969 0.72 0.33022
Target:  5'- -aGCCguucaucacCCGCGGCGGGacGCgGGCGGCg -3'
miRNA:   3'- ugCGGau-------GGCGCCGCCC--CGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 134106 0.72 0.334352
Target:  5'- gGCGCCUACCGCucGGacgcccccguccaGGcGGCCGucGCGGCg -3'
miRNA:   3'- -UGCGGAUGGCG--CCg------------CC-CCGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 5167 0.72 0.337127
Target:  5'- gGCGCg-ACCGgGGCGGcGGCCGGCc-- -3'
miRNA:   3'- -UGCGgaUGGCgCCGCC-CCGGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 168130 0.72 0.337127
Target:  5'- -gGCCcgGCCGCGGCgaGGGGCUGGgGGu -3'
miRNA:   3'- ugCGGa-UGGCGCCG--CCCCGGCUgCUg -5'
8949 3' -64.4 NC_002512.2 + 203140 0.72 0.337127
Target:  5'- -gGCCaucACCGUGGCGuacagcGGcGCCGGCGACg -3'
miRNA:   3'- ugCGGa--UGGCGCCGC------CC-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 202521 0.72 0.344138
Target:  5'- gGCGgagGCgGCGGCgGGGGCgGACGACc -3'
miRNA:   3'- -UGCggaUGgCGCCG-CCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 131740 0.72 0.344138
Target:  5'- gGCGaCC-GCCGgGGCGGgcGGCCG-CGACg -3'
miRNA:   3'- -UGC-GGaUGGCgCCGCC--CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 156512 0.72 0.344138
Target:  5'- -gGCCUGg-GCGGCGGGGCgcgggggucCGGCGGCg -3'
miRNA:   3'- ugCGGAUggCGCCGCCCCG---------GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 138198 0.72 0.344138
Target:  5'- cGCGgacauCCUACCGU--CGGGGCCGACgGACg -3'
miRNA:   3'- -UGC-----GGAUGGCGccGCCCCGGCUG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 160820 0.71 0.351253
Target:  5'- cCGCCccggcACCaGCaGGCGGgcGGCCGGCGGCg -3'
miRNA:   3'- uGCGGa----UGG-CG-CCGCC--CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 149248 0.71 0.351253
Target:  5'- gGCGCCgccGCCGCGGacggccggaCGGGuaCGACGAg -3'
miRNA:   3'- -UGCGGa--UGGCGCC---------GCCCcgGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 65516 0.71 0.351253
Target:  5'- -gGCCUGCUGCuGGCGGcGGaaGAUGAUg -3'
miRNA:   3'- ugCGGAUGGCG-CCGCC-CCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 108726 0.71 0.351253
Target:  5'- aACGCCUcgcccuggGCCGCGGcCGGcgucucGGCCGccguCGACg -3'
miRNA:   3'- -UGCGGA--------UGGCGCC-GCC------CCGGCu---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 5302 0.71 0.354128
Target:  5'- cGCGcCCUgacguaacccggguaGCCGCGGUGGGGaUCGAUGGg -3'
miRNA:   3'- -UGC-GGA---------------UGGCGCCGCCCC-GGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 4598 0.71 0.358472
Target:  5'- gGCGCCgcggGCCGCGaGaCGGacGCCGAgGACg -3'
miRNA:   3'- -UGCGGa---UGGCGC-C-GCCc-CGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 13562 0.71 0.358472
Target:  5'- cCGCCgACCGCGuCGGGGCCG-CaGAUg -3'
miRNA:   3'- uGCGGaUGGCGCcGCCCCGGCuG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 147052 0.71 0.358472
Target:  5'- cGCGCggACCGgGGCGGGaacguGUgGGCGACg -3'
miRNA:   3'- -UGCGgaUGGCgCCGCCC-----CGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 221434 0.71 0.358472
Target:  5'- cCGCCaugcggACCGCGGcCGGGGCgCGGucgucCGACc -3'
miRNA:   3'- uGCGGa-----UGGCGCC-GCCCCG-GCU-----GCUG- -5'
8949 3' -64.4 NC_002512.2 + 185544 0.71 0.365794
Target:  5'- -gGCCUAccggccCCGCGGCGuGGCCGuCGAg -3'
miRNA:   3'- ugCGGAU------GGCGCCGCcCCGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 34910 0.71 0.368011
Target:  5'- uGCGCCgagaggaggacgagaCGaCGGCGGGGUCGcgGCGACg -3'
miRNA:   3'- -UGCGGaug------------GC-GCCGCCCCGGC--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.