miRNA display CGI


Results 81 - 100 of 401 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 159014 0.67 0.615126
Target:  5'- gGCGUCcgcGCCG-GGCGGa-CCGACGACu -3'
miRNA:   3'- -UGCGGa--UGGCgCCGCCccGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 186703 0.67 0.615126
Target:  5'- -gGCCUucguCUGCGGCGGGuUgGGCGAg -3'
miRNA:   3'- ugCGGAu---GGCGCCGCCCcGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 134999 0.67 0.615126
Target:  5'- gACGCCUAcCCGUucguccuggaGGauucGGGCCGGCgGACg -3'
miRNA:   3'- -UGCGGAU-GGCG----------CCgc--CCCGGCUG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 9487 0.67 0.615126
Target:  5'- -gGCCcGCgaGCGGCGGGuagaCGACGGCc -3'
miRNA:   3'- ugCGGaUGg-CGCCGCCCcg--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 3425 0.67 0.614188
Target:  5'- -gGCCUccucCCGCcucGCGGGGCUggucgguGACGGCg -3'
miRNA:   3'- ugCGGAu---GGCGc--CGCCCCGG-------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 24915 0.67 0.614188
Target:  5'- cCGUCgcCCGCGGCGucGGGCuCGgcccgcaGCGACg -3'
miRNA:   3'- uGCGGauGGCGCCGC--CCCG-GC-------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 128020 0.67 0.614188
Target:  5'- cGCGgCUGCUGCGGCcGGGUCGcucgcugccucugGCGGa -3'
miRNA:   3'- -UGCgGAUGGCGCCGcCCCGGC-------------UGCUg -5'
8949 3' -64.4 NC_002512.2 + 150289 0.67 0.614188
Target:  5'- gGCG-CUGCCGCccgcgaagaGGCGGaGGagcgagaCCGGCGGCg -3'
miRNA:   3'- -UGCgGAUGGCG---------CCGCC-CC-------GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 95252 0.67 0.614188
Target:  5'- gGCGuCCggaggGCCGCgcggcuccugaacGGCGGGGUCGGguucccguCGGCg -3'
miRNA:   3'- -UGC-GGa----UGGCG-------------CCGCCCCGGCU--------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 202006 0.67 0.612312
Target:  5'- uCGUCUcggACagGUGGCGGGGCCGGgucccccgccggucCGGCu -3'
miRNA:   3'- uGCGGA---UGg-CGCCGCCCCGGCU--------------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 157701 0.67 0.609499
Target:  5'- cGCGCCUucGCCuCGGCGGGcugcuacgugaagaaGUCGGCGuCc -3'
miRNA:   3'- -UGCGGA--UGGcGCCGCCC---------------CGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 5497 0.67 0.60575
Target:  5'- cGCGCgU-CCGCGcCGGGGUCG-CGAg -3'
miRNA:   3'- -UGCGgAuGGCGCcGCCCCGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 192562 0.67 0.60575
Target:  5'- aGCGCgU-CCGUGGcCGGGGCCu-CGGa -3'
miRNA:   3'- -UGCGgAuGGCGCC-GCCCCGGcuGCUg -5'
8949 3' -64.4 NC_002512.2 + 16252 0.67 0.60575
Target:  5'- uCGCCgucgcCCGCGGCGgccaagagucaGGGaCCGgacGCGACg -3'
miRNA:   3'- uGCGGau---GGCGCCGC-----------CCC-GGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 12604 0.67 0.60575
Target:  5'- gGCGCgCgguCCGCauGGCGGagcuggugaGGCCGAUGAUc -3'
miRNA:   3'- -UGCG-Gau-GGCG--CCGCC---------CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 127273 0.67 0.60575
Target:  5'- gGCGUUcccCCGggcguUGGCGGcGGCCGACGAg -3'
miRNA:   3'- -UGCGGau-GGC-----GCCGCC-CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 7453 0.67 0.60575
Target:  5'- -gGCCcgggggaaGCCGCGGCGcGGCUGcCGGCc -3'
miRNA:   3'- ugCGGa-------UGGCGCCGCcCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 105112 0.67 0.60575
Target:  5'- gAC-CCgggACugCGCGGuCGucuGGGCCGACGACg -3'
miRNA:   3'- -UGcGGa--UG--GCGCC-GC---CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 227093 0.67 0.60575
Target:  5'- cCGCCgGCCGcCGGCcGGGUCGGgcucaGACg -3'
miRNA:   3'- uGCGGaUGGC-GCCGcCCCGGCUg----CUG- -5'
8949 3' -64.4 NC_002512.2 + 204798 0.67 0.60575
Target:  5'- gACGCCcgggagguCCGCGucccgGGGGCgCGGCGGCu -3'
miRNA:   3'- -UGCGGau------GGCGCcg---CCCCG-GCUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.