miRNA display CGI


Results 61 - 80 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 121709 0.66 0.633905
Target:  5'- cCGCCcugaacGCCGCaGaaGGcGCCGGCGACg -3'
miRNA:   3'- uGCGGa-----UGGCGcCgcCC-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 121213 0.66 0.633905
Target:  5'- aGCGCCcucgUCGuCGGCGGGGaguacaUGugGACc -3'
miRNA:   3'- -UGCGGau--GGC-GCCGCCCCg-----GCugCUG- -5'
8949 3' -64.4 NC_002512.2 + 103123 0.66 0.632966
Target:  5'- cCGCCgccGCCGCgccccgaGGCGucucGGGCCaagaGGCGACg -3'
miRNA:   3'- uGCGGa--UGGCG-------CCGC----CCCGG----CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 129845 0.66 0.632966
Target:  5'- cGCGUCUcagcGCC-CGGCGGaggagccccuugaGGCCGcacGCGACg -3'
miRNA:   3'- -UGCGGA----UGGcGCCGCC-------------CCGGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 154311 0.66 0.632966
Target:  5'- cACGUCgACCGCgacGGCGGcGGCCccgccccGGCGAg -3'
miRNA:   3'- -UGCGGaUGGCG---CCGCC-CCGG-------CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 117100 0.66 0.632966
Target:  5'- cCGCCcuggACCcggcacaGCGGCacGGGGCCccgucGGCGGCg -3'
miRNA:   3'- uGCGGa---UGG-------CGCCG--CCCCGG-----CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 119942 0.66 0.62733
Target:  5'- uCGCCcccGCaCGCGGUggacuucguggcgcuGGGGCCGaacgcgcGCGACg -3'
miRNA:   3'- uGCGGa--UG-GCGCCG---------------CCCCGGC-------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 95107 0.66 0.624513
Target:  5'- -aGCUcGgCGaCGGCGGGcccGCCGACGAa -3'
miRNA:   3'- ugCGGaUgGC-GCCGCCC---CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 225792 0.66 0.624513
Target:  5'- uGCGCCggccggGCCGCgGGCGGccggguGGCCuGgGACc -3'
miRNA:   3'- -UGCGGa-----UGGCG-CCGCC------CCGGcUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 78552 0.66 0.624513
Target:  5'- gGCGCCgGCCGgGccGCGaGGGCgGAUGGa -3'
miRNA:   3'- -UGCGGaUGGCgC--CGC-CCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 22732 0.66 0.624513
Target:  5'- -aG-CUACCGCgGGCGGcuGCUGACGAUc -3'
miRNA:   3'- ugCgGAUGGCG-CCGCCc-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 91976 0.66 0.624513
Target:  5'- cACGuCCggaggGCCGCGucCGGGucucccgcgucGCCGGCGGCg -3'
miRNA:   3'- -UGC-GGa----UGGCGCc-GCCC-----------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 80818 0.66 0.624513
Target:  5'- cGCGCCUcggcguCgGCGGaGGGGCCccguaGGCGAg -3'
miRNA:   3'- -UGCGGAu-----GgCGCCgCCCCGG-----CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 135333 0.66 0.624513
Target:  5'- gGCGUCaGCCGCGcCGGggugcugcuGGCCGuCGACc -3'
miRNA:   3'- -UGCGGaUGGCGCcGCC---------CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 122795 0.66 0.623574
Target:  5'- gGCGCCggGCCcugGCGGCGGGuccccuacguccaGCgCGuCGACc -3'
miRNA:   3'- -UGCGGa-UGG---CGCCGCCC-------------CG-GCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 224679 0.67 0.61888
Target:  5'- cCGCCgucggcuggcCCGCGGUccugcccgcccugcuGGGGCCGGCcGCc -3'
miRNA:   3'- uGCGGau--------GGCGCCG---------------CCCCGGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 159014 0.67 0.615126
Target:  5'- gGCGUCcgcGCCG-GGCGGa-CCGACGACu -3'
miRNA:   3'- -UGCGGa--UGGCgCCGCCccGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 134999 0.67 0.615126
Target:  5'- gACGCCUAcCCGUucguccuggaGGauucGGGCCGGCgGACg -3'
miRNA:   3'- -UGCGGAU-GGCG----------CCgc--CCCGGCUG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 123659 0.67 0.615126
Target:  5'- aACGCC-GCgGCGGCcGGGCuCGGgGAa -3'
miRNA:   3'- -UGCGGaUGgCGCCGcCCCG-GCUgCUg -5'
8949 3' -64.4 NC_002512.2 + 9487 0.67 0.615126
Target:  5'- -gGCCcGCgaGCGGCGGGuagaCGACGGCc -3'
miRNA:   3'- ugCGGaUGg-CGCCGCCCcg--GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.