miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 2284 0.66 0.651741
Target:  5'- cCGCCcuccgGCCGCugcggguGGCGGGGCucugcugcgcCGGCGGu -3'
miRNA:   3'- uGCGGa----UGGCG-------CCGCCCCG----------GCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 224075 0.66 0.643296
Target:  5'- gACGCC-GCCGaa-CGGGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGaUGGCgccGCCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 148076 0.66 0.643296
Target:  5'- cGCGCCgcggucguCCGUcccccGGCGGcGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGau------GGCG-----CCGCC-CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 192894 0.66 0.643296
Target:  5'- aGCGCCgucgcgcuCCGCGGCGGuccagaGCCGccucCGAUg -3'
miRNA:   3'- -UGCGGau------GGCGCCGCCc-----CGGCu---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 214315 0.66 0.643296
Target:  5'- -gGCgUGCCGCacgaGCa-GGCCGACGACu -3'
miRNA:   3'- ugCGgAUGGCGc---CGccCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 99312 0.66 0.643296
Target:  5'- cCGCCcGCuCGCGGCGGccuaCGACGAa -3'
miRNA:   3'- uGCGGaUG-GCGCCGCCccg-GCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 8624 0.66 0.637662
Target:  5'- cGCGCCccgcgucccccgacuUccGCCGCGGCc-GGCCGAuCGACc -3'
miRNA:   3'- -UGCGG---------------A--UGGCGCCGccCCGGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 121709 0.66 0.633905
Target:  5'- cCGCCcugaacGCCGCaGaaGGcGCCGGCGACg -3'
miRNA:   3'- uGCGGa-----UGGCGcCgcCC-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 118488 0.66 0.633905
Target:  5'- gGCGCCgagcUGCCGgGGCGGGa-CGGCuACg -3'
miRNA:   3'- -UGCGG----AUGGCgCCGCCCcgGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 118715 0.66 0.633905
Target:  5'- cCGCCUGCCGCuc----GCCGGCGACg -3'
miRNA:   3'- uGCGGAUGGCGccgcccCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 121213 0.66 0.633905
Target:  5'- aGCGCCcucgUCGuCGGCGGGGaguacaUGugGACc -3'
miRNA:   3'- -UGCGGau--GGC-GCCGCCCCg-----GCugCUG- -5'
8949 3' -64.4 NC_002512.2 + 121995 0.66 0.633905
Target:  5'- -aGCCUuuaucggcGCC-CGGaGGGGCCGgagGCGGCg -3'
miRNA:   3'- ugCGGA--------UGGcGCCgCCCCGGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 8919 0.66 0.633905
Target:  5'- -gGCCagggcgGCCuCGGCcGGGUCGGCGAUg -3'
miRNA:   3'- ugCGGa-----UGGcGCCGcCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 36981 0.66 0.633905
Target:  5'- gGCGgCUcuggACCGCcGCGGaGCgCGACGGCg -3'
miRNA:   3'- -UGCgGA----UGGCGcCGCCcCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 222434 0.66 0.633905
Target:  5'- cCGC--GCCGCGGCuucccccGGGCCG-CGGCc -3'
miRNA:   3'- uGCGgaUGGCGCCGc------CCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 174404 0.66 0.633905
Target:  5'- gGCGCgUucCCGCGGCgccGGGGCCucCGuCg -3'
miRNA:   3'- -UGCGgAu-GGCGCCG---CCCCGGcuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 226293 0.66 0.633905
Target:  5'- uGCGCCUGuccccgagacccCCGgGGCcuguGGGCCGugG-Cu -3'
miRNA:   3'- -UGCGGAU------------GGCgCCGc---CCCGGCugCuG- -5'
8949 3' -64.4 NC_002512.2 + 202132 0.66 0.633905
Target:  5'- gGCGCCggucucgGCCGCcgccGCGGGGCgGGUGGu -3'
miRNA:   3'- -UGCGGa------UGGCGc---CGCCCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 77086 0.66 0.633905
Target:  5'- cCGCCgucGCCGCGGaccuccgagaCGGaGGCCcGGCGGu -3'
miRNA:   3'- uGCGGa--UGGCGCC----------GCC-CCGG-CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 193375 0.66 0.633905
Target:  5'- uCGUC-GCCGCgGGCGGGGaCGACa-- -3'
miRNA:   3'- uGCGGaUGGCG-CCGCCCCgGCUGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.